Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq196 250 3e-61 >seq196 Length=8782 Score = 250 bits (276), Expect = 3e-61 Identities = 525/769 (68%), Gaps = 23/769 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||| ||||| | |||||| | || ||||| || || || |||| Sbjct 7548 CATAACTCCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTG 7489 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||| ||| ||||| ||||||||||||| | ||| |||| | | | ||| Sbjct 7488 TAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGA--ACA 7431 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | || | | ||| | | ||| ||||||||||| || |||| ||||| | | | Sbjct 7430 T-CTAGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGA 7372 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || | ||| || | || ||| | |||| ||| | | || Sbjct 7371 ATTCATCCCAATGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAAC 7312 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTG---GGGGATATTTTAAATATTT 37165 ||| ||| ||||| | | |||| |||| || | ||| ||||| ||| Sbjct 7311 AGCTTCT---GCTATAATTTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTT 7255 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 | | | ||||||| |||| || ||| | ||||||||||||| ||| | ||||||||| Sbjct 7254 ATAAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGA 7195 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-C 37284 ||| |||||||| |||||||| || | ||| |||| ||||||||| || |||||| | | Sbjct 7194 AAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGC-ACAAAAGCTGC 7136 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 ||||||| || |||||||||||||| |||| || | | || | | | || ||| | Sbjct 7135 CAGAAAACAAGATACCTTCAACTGC-ACAAAAGCCA-ATTACTCTTTCTGCAA-ATGACC 7079 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACAT--TCAAT-TG 37401 || || | ||||| ||| ||| ||| |||||||| |||||| | | ||| || Sbjct 7078 GATTATTATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTG 7019 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||||| || || | | |||| ||||| |||||| |||||||| Sbjct 7018 AT---ATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTA 6962 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | ||| ||||| |||||| | || ||||| || ||||| |||||| | | Sbjct 6961 AAAGGGAATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTC 6902 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||||| || ||||| || || ||||| | ||||||||| || | || || | Sbjct 6901 TAGCTTCTTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTC 6842 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 |||||||||||||||| || || | |||||||| ||||||||| |||| Sbjct 6841 CATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 6793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592306153105520