Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1249 161 5e-35 >seq1249 Length=14599 Score = 161 bits (178), Expect = 5e-35 Identities = 347/517 (67%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | ||| ||| | |||| | ||| ||| ||||||| || | ||| || ||| Sbjct 12681 GGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATC 12740 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | ||| ||||| ||| | |||||| || ||||| || || ||||| ||| Sbjct 12741 CATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATC 12800 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 |||| || || |||| ||| | ||||| ||||| ||||||| ||||| ||| || Sbjct 12801 TCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTC 12860 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 ||||||||||||||||| || || || | ||| || ||||| | || || ||||||| Sbjct 12861 CTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGA 12920 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 | ||| ||| | || || || || | | | || | ||||||| | || |||| Sbjct 12921 ATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTA 12980 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTA 26251 | || | || | ||||||||| || ||| |||||| | | |||| Sbjct 12981 GAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTAGTGTA 13040 Query 26252 TCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGC 26311 || ||||| || | || ||| || |||| | | ||||||||| || | || Sbjct 13041 TCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGT 13100 Query 26312 GAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTC 26371 | || || || | ||| ||||||||||| |||||||||||| |||| |||| Sbjct 13101 GGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATA--CTTCTGAG 13158 Query 26372 AAAGCTGT--ATAAGTTTCAAGAACTTCATCGATATT 26406 | ||| || ||||||||||| || |||| ||||| Sbjct 13159 AGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATT 13195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253035565315850