Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1249 138 1e-27 seq62 91.5 2e-13 >seq1249 Length=14599 Score = 138 bits (152), Expect = 1e-27 Identities = 705/1105 (64%), Gaps = 22/1105 (2%) Strand=Plus/Minus Query 75497 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 75556 || || || || |||||| || ||||| | ||||||||||| || || | ||| | Sbjct 12955 ATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGTGTATAATGAT 12896 Query 75557 ACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGG---GGTCCA-TCGCGGTCTACTT 75612 ||||| || ||||| | |||| | || | |||| ||| || | || ||||| || Sbjct 12895 ACAGCACGTTATGTTGACCAAG-GTGGAGGAAAAAGGAAGGGTGCACTTGCTGTCTATTT 12837 Query 75613 GGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGA 75672 |||||| |||||||| ||| | |||| || | ||| || | ||||| ||| | || Sbjct 12836 GGAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCATGGTAAAGA 12777 Query 75673 AGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 ||| | || | ||| | ||| || | || ||||| || || || |||||| || | Sbjct 12776 GGAGATGAGATGCCGTGATATATTTCCAGCACTATGGATACCTGATCTGTTCATGGAGAG 12717 Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCG 75791 || ||| ||| || | ||| | | | ||||| || || || || || | | Sbjct 12716 AGTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGC-CCTGGGATGCAAG 12658 Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851 | | |||||| | ||| ||| | || | | |||||| | || ||| | | | Sbjct 12657 ATGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAGGTCGCGGTA 12598 Query 75852 ATGCGACTGTACCAGCCGCCGATGTTTG--GAAGGCTATTCTCAAATCACAGACGGAGAC 75909 || | ||| | | ||||| | || | || | ||||| | ||||| Sbjct 12597 GGAAAACAATTAAAGCA--CAAAGTTTGTGGTTTGCATTGCTACAGTCACAAATTGAGAC 12540 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || || |||| ||| || |||||||| ||| || || || ||| | ||| | Sbjct 12539 AGGTACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAACAAAATCT 12480 Query 75970 GGGAACAATCAAGAGCTCA-AATCTTTGCACGGAAATTTTAGAGTACAC-AGATAAGGAT 76027 ||| || || || | || ||||| || || |||||| | ||||| || || | | | Sbjct 12479 GGGTACGATAAA-ATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTTCAA-AC 12422 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACT 76087 ||| || ||||| || |||||||| || | || || | ||| || || | | Sbjct 12421 GAGGTCGCAGTTTGTAACTTGGCATCTATAGGGCTCCCTCGTTTTGTTGATAGGGATAAT 12362 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | || |||| | |||| || ||||| | |||| | | || | |||||||| Sbjct 12361 AAGAAATTCGATTTTAAAAAGCTATATGAAGTAGTAAAGGTAGCAACAAGGAATCTAAAT 12302 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACA 76206 ||| ||||| | | |||||| || ||| ||| || ||||||| || |||| Sbjct 12301 GAAGTTATTGATCGTGGATATTATCCTATTCCAGAGTGCAGGAG-GTCTAATCTGAGACA 12243 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 || || ||||||| || || |||||||| || ||| ||||| | | | || | Sbjct 12242 TAGGCCACTTGGTTTAGGAGTACAAGGTCTTGCAGATTGTTTTATGATATTGAGATATCC 12183 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 || ||| || | || |||| | | | |||| | || ||||| || || || | || Sbjct 12182 ATATGAATCTAAAGATGCCAGGAAACTAAATGTTGAGATATTTGAGACAATATACTATGC 12123 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 | || || || |||||||| | || || | ||| ||||||| |||||| | || Sbjct 12122 TGCTCTTGATGCAAGTTGTGAGCTAGCAGAGAAGTATGGTCCCTATGAAACATTTCAAGG 12063 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA- 76445 ||| || || ||| |||| || |||||| | ||| || ||| |||| |||| Sbjct 12062 TTCACCAGCTAGTAGAGGTCTGCTACAATTTGATCTCTGG-AATGTGCAACCCTCCTCAG 12004 Query 76446 -ACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 ||| | |||||||| | || ||||| || || | || ||| | ||| Sbjct 12003 GACTTTGGAACTGGGATTTACTGAAGGAGAAAATAGCTAAGTATGGCCTTAGAAACTCGT 11944 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562 | ||| | || |||||||| || || || || | || | | || ||||||||| ||| Sbjct 11943 TGTTGGTAGCTCCAATGCCTACCGCATCTACATCTCAGTTACTAGGGAATAATGAAAGCT 11884 Query 76563 TTGAACCATACACAACAAACATCTA 76587 ||||||||| || |||| || || Sbjct 11883 TTGAACCATTTACCTCAAATATATA 11859 >seq62 Length=14813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 314/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 ||||| | |||||| ||| |||||||| | ||| || || | ||||| || || Sbjct 9250 GATGGATTAAAGCCTGGACAAAGGAAAGTTTTATATTCTGTGTTTAAAAAGAAGCTGAAT 9309 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 |||||||||| || |||||| | || | ||||| || || | ||| ||||| ||| Sbjct 9310 AATGAAATGAAAGTAGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCATACCATCAT 9369 Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542 ||||||| || ||| | |||||||| || |||| | || | || ||| Sbjct 9370 GGTGAAGCTTCTTTACAGAGTACGATTGTAAATATGGCGCAAGATTTTGTTGGAAGTAAC 9429 Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602 || | ||| | ||| | || |||||||||||||||| | ||||| |||||| Sbjct 9430 AATTTGAACTTACTTCAGCCATGTGGTCAATTTGGTAGCAGGAAAGAAGGTGGCAAGGAT 9489 Query 14603 GCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATCTT--- 14658 || | | | ||||| || |||||| ||| | | || |||| | || || Sbjct 9490 GCAAGTGCTGCCCGTTACATATTTACAAAA-TTATCTACTTGGACTCGTTATATTTTCCC 9548 Query 14659 TGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACC 14718 || || ||||| || | | | || || | |||||||| | |||||||| Sbjct 9549 AGAAGCT---GATGATCCATTGTTAATATATCTGCAAGATGATGGTCAACAAATTGAACC 9605 Query 14719 AGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTAC 14778 || || | |||| | |||||||| | || || || | || ||||| ||||| Sbjct 9606 TTTATTCTATGTACCAATCATTCCAATGGTCTTAGTTAACGGTGCTGATGGTATTGGTAC 9665 Query 14779 GGGTTTCAGTTGCTATGTACCACCATTCAACCCCAAGGATATCAAGGAGAATATTCAAAG 14838 || | ||||| | ||| ||| | ||||| || ||||||| | ||| | |||| Sbjct 9666 TGGATGGAGTTGTTCTGTTCCAAACTATAACCCTAAAGATATCATTAATAATCTGAAAAG 9725 Query 14839 AGCCTT 14844 |||||| Sbjct 9726 AGCCTT 9731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558876661440