Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq196 217 3e-51 seq581 192 1e-43 seq431 163 6e-35 >seq196 Length=8782 Score = 217 bits (240), Expect = 3e-51 Identities = 547/814 (67%), Gaps = 40/814 (5%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| |||||| || | || ||| ||||||||||||| || ||| || | ||| Sbjct 7492 CTTGTAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAA 7433 Query 49633 CTATCAA-TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | ||| | | || | | ||| | ||| || |||||||||| |||||| | ||||||| | Sbjct 7432 C-ATCTAGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTA 7374 Query 49692 CAATTCATACCCAATAA--TTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 49749 ||||||| |||||| | | || | ||||||| |||| | |||| ||| | || Sbjct 7373 GAATTCAT-CCCAATGAGATCTACA-GGTAATGAATCACATAAAAATGTACGTTCAACTT 7316 Query 49750 ctacagcttgtttaattatcataattatattatttt---ttgataatttatatttaatat 49806 | ||||||| | || || | || | | ||| | || | |||||||| | Sbjct 7315 CAACAGCTTCTGCTATAAT--TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGT 7258 Query 49807 gattcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATT 49866 | ||| | ||||||| |||| || | ||| | ||| || || |||||||| | || Sbjct 7257 TTT----ATAAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTT 7202 Query 49867 CATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA 49926 ||||| ||| |||||||| ||||||||||| | || |||||||||||||| | || Sbjct 7201 CATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAA 7142 Query 49927 AACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA-TTATTCTTGCTCCAAAC 49985 | || | |||||| || ||||| || || | |||| || | ||| |||| || |||| Sbjct 7141 AGCTGCCAGAAAACAAGATACCTTCAACTG-CACAAAAGCCAATTACTCTTTCTGCAAA- 7084 Query 49986 ATTAATTTATCATCTAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGG 50044 | | || || || | ||||| ||| | ||||| ||||| || |||| | | || Sbjct 7083 --TGACCGATTAT-TATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 7027 Query 50045 TATATTTTCTATAGCTTTAAATA--ATTC----AtttttttCATNNNNNNNNNNNNNNNN 50098 || || | ||| |||| ||| | ||| || |||| ||| Sbjct 7026 TAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATC 6967 Query 50099 NNNNNNNATTAATAAAGAATACATTTCAGAATGTA-CAGCTTCCATAGCTATTTGAAATG 50157 ||||| | ||||| ||||| || | | ||| ||||||| ||||||||| Sbjct 6966 A------ATTAAAAGGGAATAAGTTTCACTGTGAATCTGCT-CCATAGCAATTTGAAATC 6914 Query 50158 AATAAAATTGTCTTGCTTCTGAATACTGAA-CTTCGGAAAAGAATCGTTCAACTAAATTC 50216 |||| | ||| |||||| |||| || | ||| ||| | || |||| ||| Sbjct 6913 CATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTC 6855 Query 50217 TCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTT 50276 || |||||| |||||| ||||| || |||||||| || |||||||||||||||||| Sbjct 6854 TCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT 6795 Query 50277 TCATTATCTTTTAAATTTTCCCAAGAT-TCAAGATCGTTTGATAAATCTACTTCTTCTAT 50335 || || |||||| |||||||| | ||| | || | |||||||| |||||| Sbjct 6794 TCTGGTTCCTTTAAACTTTCCCAATCTCTCATG-TCCTGACCTAAATCTATCTCTTCTGC 6736 Query 50336 TGTCCAAAATGATGCTACGGATTTTTTATACATT 50369 ||||||||||| ||| | |||||| |||||| Sbjct 6735 AGTCCAAAATGAGGCTTCTTCTTTTTTGTACATT 6702 >seq581 Length=7318 Score = 192 bits (212), Expect = 1e-43 Identities = 180/228 (79%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | |||||| |||||||| || || | || || |||||||||||||| Sbjct 1174 ACCACCTCTTAAACGTAAAACTAAATG-AAGGTTGATTCCTTCTGAATATTATAATCAGA 1232 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| || | |||||| |||||||| |||||||| |||||||||||||| Sbjct 1233 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 1292 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| |||||| |||||||| |||| ||| || | ||| || Sbjct 1293 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 1352 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || |||||||| ||||| || || | ||| |||||||| Sbjct 1353 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 >seq431 Length=1763 Score = 163 bits (180), Expect = 6e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||||| |||||| | | | || |||||||||||||||| ||| || ||||| || Sbjct 104 AATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTA 163 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| |||| |||| || | ||| || |||||||||||||| | |||||||| Sbjct 164 GTCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATC 223 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || |||||||| || || |||||||| || |||||||| || | ||| || | Sbjct 224 TGGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGG 283 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| ||||||| ||||| ||||| |||||||| ||||||| ||| || |||||| Sbjct 284 TTCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984461861571300