Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq196 223 6e-53 seq581 183 5e-41 seq431 156 8e-33 >seq196 Length=8782 Score = 223 bits (246), Expect = 6e-53 Identities = 565/851 (66%), Gaps = 30/851 (4%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||||||||||| ||| ||| || |||||||| ||||| |||| |||||| || | || Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAAT 38951 ||| ||||||||||||| || ||| || | ||| | ||| | | || | | | Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAAC-ATCTAGTGCAAACAGT 7416 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA- 39010 || | ||| || |||||||||| |||||| ||||||| | ||||||| |||||| | Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCAT-CCCAATGAG 7357 Query 39011 -TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || | ||||||| |||| | |||| ||| | ||| ||||||| | || | Sbjct 7356 ATCTACA-GGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 7298 Query 39070 tcataattatattatttt---ttgataatttatatttaatatgattcgcatataGTAAAC 39126 | | || | | ||| | || | |||||||| | | ||| ||||||| Sbjct 7297 T--TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTT----ATAAAGTAAAC 7244 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 || |||| |||| ||| | |||||| || |||||||| | ||||||| ||| ||||||| Sbjct 7243 ATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 7184 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||||||||| | || |||||||||||||| | ||| || | |||||| || | Sbjct 7183 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGA 7124 Query 39247 TACCCTCCAC-ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 |||| || || ||| ||| | |||| |||| || |||| | | || || Sbjct 7123 TACCTTCAACTGCAC-AAAAGCCAATTACTCTTTCTGCAAA---TGACCGATTATTATTC 7068 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| ||| | ||||| ||||| || |||| | | |||| || | ||| |||| | Sbjct 7067 ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCA 7008 Query 39366 AATA--ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 || | ||| | ||||| Sbjct 7007 AAAAGCATT--TGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAG 6950 Query 39424 TTTCAGAATGTA-CAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||| || | | || |||||||| ||||||||| |||| | || |||||| Sbjct 6949 TTTCACTGTGAATCTGC-TCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 6891 Query 39483 TACTGAA-CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 |||| || | ||| ||| | || |||| ||||| |||||| |||||| || Sbjct 6890 ATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 6832 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 ||| || |||||||| ||||||||||||||||||||||| || |||||| ||||||| Sbjct 6831 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCA 6772 Query 39602 AGAT-TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660 | | ||| | || | |||||||| |||||| |||||||| || ||| | || Sbjct 6771 ATCTCTCATG-TCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 6713 Query 39661 TTTTATACATT 39671 |||| |||||| Sbjct 6712 TTTTGTACATT 6702 >seq581 Length=7318 Score = 183 bits (202), Expect = 5e-41 Identities = 178/228 (78%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | ||||| |||||||| || || | || || |||||||||||| || Sbjct 1174 ACCACCTCTTAAACGTAAAACTAAATG-AAGGTTGATTCCTTCTGAATATTATAATCAGA 1232 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | |||||| ||||||||||||||||| ||||| |||||||| Sbjct 1233 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 1292 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| |||||||| |||||||| || | ||| || Sbjct 1293 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 1352 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || || |||||||| ||||| || || | || |||||||| Sbjct 1353 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 1400 >seq431 Length=1763 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| |||||| | | | || |||||||||||||||| ||| || |||||| || Sbjct 105 ATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAG 164 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 |||||||||| || | || || | ||| || |||||||| ||||| | ||||| || Sbjct 165 TCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCT 224 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || |||||||| || || |||||||| || |||||||| || ||||| || | | Sbjct 225 GGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGT 284 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||| ||||| ||||| |||||||| ||||||| || || |||||| Sbjct 285 TCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905119730180400