Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq735 163 8e-35 seq1 118 3e-21 seq62 107 6e-18 >seq735 Length=3475 Score = 163 bits (180), Expect = 8e-35 Identities = 356/518 (69%), Gaps = 19/518 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||||||||||| ||||||||||| || | ||||| | Sbjct 752 CTATCAAATCTACCTGGTCTTGTTAATGCTGGATCTAATATATCAGCACGATTTGTACCA 811 Query 288910 GCCAATACAACAATAGATTCGGTTTG-CTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || ||||| | ||| | |||| | |||| |||||||| ||| | |||||| Sbjct 812 GCTAATACTATTATA-CCACTTTTTGACGTAAAACCATCCATTTCAACTAACAATTGATT 870 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCttttt 289026 | ||| | ||| ||||||||||||||| | | |||| | | || | ||||||| Sbjct 871 TAATGTATTTTCTCTTTCATCATTTGAATTATTAGCAAATC-CACTTAT-TCCCCTTTTT 928 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||||||||| ||||| || || | || || | ||||| | || || Sbjct 929 TTTCCAATTGCATCAATTTCATCAATAAATATAATACTTGGTGCATTTTTTTGTGC--TT 986 Query 289087 G--CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | |||||| || | || | || ||||| ||||||| | ||||| | ||| ||| Sbjct 987 GAAGAAATAAATCACGAACTCTACTTGGTCCAATACCAACAAATATTTCAATAAAATCAC 1046 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| || || | |||||| ||||| ||||| || || | || | | || Sbjct 1047 TACCTGATATAGAAAAAAAAGATACATTGGCTTCACCTGCAACAGCTTTTGCTAATAATG 1106 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | ||||| ||||| ||||| || |||||| |||| || |||| |||||| || | Sbjct 1107 TTTTACCAGTTCCTGGTGGACCAACTAATAATGCTCCTTTAGGTATTTTTGCACCTAAAA 1166 Query 289265 ACTTATA--TTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | | ||| || | || || |||||||| ||||||| || | | ||||| ||| | Sbjct 1167 ATTCATAACGTTTT---GGTTCTTTTAAAAAATCTACAA-ATCTTGTATTTCATTTTTAG 1222 Query 289322 CCTC-ATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | || ||| | || || |||||| |||| | ||||| Sbjct 1223 CTTCTTTCATA-CCAGCAACATCACCAAATTTTATATT 1259 >seq1 Length=29879 Score = 118 bits (130), Expect = 3e-21 Identities = 299/443 (67%), Gaps = 34/443 (8%) Strand=Plus/Plus Query 381028 GAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATTAT 381087 ||||| ||||| | ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 28830 GAAGAGAATGACTTGGGTCCAATATATGGTTTTCAATGGAGACATTTTAATGCAGAATAT 28889 Query 381088 GATA-ATTG--TGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 | | | || ||||| |||||| ||| | || || || || ||| | || | || Sbjct 28890 AAGACAATGCATGATA---ATTATAATGGGCAAGGAGTAGATCAATTATCAAATTTAATT 28946 Query 381145 GAC-CAGCTAA--AAAATCCT---GAAACAAGAAAT-TCACGCCGACTAATTATGACTGC 381197 || || ||| |||||||| || | |||| || || |||| |||| Sbjct 28947 GAATCACTTAAGAAAAATCCTTATGATAGAAGACATATC-----------TTAT--CTGC 28993 Query 381198 GTGGAATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTT 381257 |||||||| | || || ||||||| ||||||||||| ||||| |||| || || Sbjct 28994 ATGGAATCCATCTGCAATGAAATATATGGCATTACCACCTTGTCATATATTATCTCAATT 29053 Query 381258 CAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGG 381317 ||||| | ||||| |||||||| | |||||||| | || ||||| | || Sbjct 29054 TTATGTTGATAATAATAATAGATTAAGTTGCTCATTATATCAAAGAAGTTGTGATTTAGG 29113 Query 381318 TCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTACTCGTT-TAATTGCTCATC 381376 | | || |||||| |||||||| || ||||| || ||| ||| | ||||||||| Sbjct 29114 TTTAGGATGTCCATTTAATATTGCATCTTATTC-ATTATTATGTGTTATGATTGCTCATA 29172 Query 381377 ACACTGGACTAATTG---CGGGTGATTTTGTTTATTATCTCGGTAATACTCATATATACG 381433 |||| || || | || || ||| | ||| | | ||| || ||||||| || | Sbjct 29173 TATGTGGA-TA--TGAACCTGGAGAATTTATACATTTTATTGGTGATGCTCATATTTATG 29229 Query 381434 ACGACCATATTGAGAATTTAAAA 381456 | | ||| ||||| | |||||| Sbjct 29230 AAAATCATGTTGAGCAATTAAAA 29252 >seq62 Length=14813 Score = 107 bits (118), Expect = 6e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGA-TAAGAATCATCGGGATAATTGGGATATA--A 60046 |||||||||||||| | | || || | ||||| ||| || || ||||| | ||| | Sbjct 9668 CCAGTACCAATACCATCAGCACCGTTAACTAAGAC-CATTGGAATGATTGGTACATAGAA 9610 Query 60047 TAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATT 60106 |||| || |||| | ||||||||||| | ||| |||| | || ||| | Sbjct 9609 TAAA--GGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATCAGCT 9552 Query 60107 TCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCT 60166 || || || ||| ||||| | ||||||| ||| || || || | | | | Sbjct 9551 TCTGGGAAAATATAACGAGTCCAAGTAGATAATTTTGTAAATATGTAACGGGCAGCACTT 9492 Query 60167 GCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 || ||||||||||| | | | |||||||| || |||||| | || || | Sbjct 9491 GCATCCTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGTTCAAA 9432 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCA 60286 |||||| || || |||| ||| || | | ||||| | || | |||| |||||| Sbjct 9431 TTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAGCTTCA 9372 Query 60287 CCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| ||| || |||||| | |||||| ||| |||||||| ||||| ||||| Sbjct 9371 CCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCA 9312 Query 60347 GAGTGGAGTTTTTTCTTGAACGCCGAATATACAATTTTCCT 60387 | || || || || ||| | ||||||| || |||||| Sbjct 9311 TTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCT 9271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471790482680606