Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1249 136 9e-27 seq196 129 1e-24 seq62 87.8 4e-12 seq1117 84.2 5e-11 >seq1249 Length=14599 Score = 136 bits (150), Expect = 9e-27 Identities = 566/886 (64%), Gaps = 13/886 (1%) Strand=Plus/Minus Query 110272 TTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTG 110331 |||| |||| || ||||| | ||| ||||||||||| ||| || ||||| ||| | Sbjct 13338 TTATTGATTTTAGCCGTGATTTTGAATATGACTATTTTGCTTTTAAGACTCTAGAAAGAT 13279 Query 110332 CTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTG 110391 |||||||||| || ||| ||| |||| | ||| | || |||||| | || | | | Sbjct 13278 CTTATTTACTGCGGGTCGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAG 13219 Query 110392 TTGCGATTGGTATTC---ATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT 110448 | | |||||| | |||| | |||| | || | |||||| |||||| | Sbjct 13218 TCTCCTGTGGTATCCACTATGG---TAATATAGATGCAGCAATTGAAACTTATGAACTGC 13162 Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508 | | | ||| | || |||||||||||| || |||| || || || ||| | | Sbjct 13161 TCTCTCAGAAGTATTTTACTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCC 13102 Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 ||| || | ||||| ||| |||| ||| ||||| || ||||| || |||| || Sbjct 13101 CACAGATGTCCTCTTGTTTTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTG 13042 Query 110569 ATGCTCTTAAAGAAA-CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTT 110627 || | | |||||||| ||| ||| || | |||| ||| | || | ||| Sbjct 13041 ATACAC-TAAAGAAATGTGCAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTT 12983 Query 110628 CATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 | |||| || | |||| || | ||| | || ||| || | ||| | Sbjct 12982 TCTAATATACGAGCTGCAGGATCATACATCCGTGGTACTAATGGTAGGTCTAATGGTTTA 12923 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAG 110744 |||||||| | | || | || || || ||| ||||| | |||||| || || Sbjct 12922 ATTCCAATGCTGCGTGTGTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAA 12863 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 || || || || ||||| ||||| | |||||||||||| | ||| | || ||||| || Sbjct 12862 AGGAAGGGTGCACTTGCTGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATA 12803 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | | || || || || || || ||| |||||| ||||| ||| | Sbjct 12802 GAGATAAGGAAGAACCATGGTAAAGAGGAGATGAGATGCCGTGATATATTTCCAGCACTA 12743 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | ||| | |||||| | | || | | ||| | ||| | | |||||| Sbjct 12742 TGGATACCTGATCTGTTCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGT 12683 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 ||| || | ||||| | ||||| | || | | ||| |||| | || ||| Sbjct 12682 CCTGATGAATGCCCTGGGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAA 12623 Query 110985 AAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA 111043 | |||||||||||||| | | | | |||| |||| ||| ||| | ||||| Sbjct 12622 CACTATGAAAAAGAAGGTCGCGGTAGGAAAAC-AATTAAAGCACAAAGTTTGTGGTTTGC 12564 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAA 111103 | | || | |||||| |||| || || ||||| | ||||| ||||| ||| ||| Sbjct 12563 ATTGCTACAGTCACAAATTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAA 12504 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 ||| ||| |||||| ||| | || || || || ||||| ||| Sbjct 12503 TCGTAAAAGCAATCAACAAAATCTGGGTACGATAAAATCTAGCAAT 12458 >seq196 Length=8782 Score = 129 bits (142), Expect = 1e-24 Identities = 347/515 (67%), Gaps = 13/515 (3%) Strand=Plus/Plus Query 131786 TTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCT 131845 || || ||| |||||| || ||||||||||| | || ||||| | || || || | Sbjct 7024 TTACCAGCAGTTAAAACTAAGGCAGAATGGGCAACAAAGTGGATGAATAATAAT--CGGT 7081 Query 131846 AATTTTTCTACAAGACTTGTAG-CTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG-TG 131903 |||| | |||| | | | |||||| | ||||||||||| || ||||| || | Sbjct 7082 CATTTGCAGA-AAGAGTAATTGGCTTTTG-TGCAGTTGAAGGTATCTTGTTTTCTGGCAG 7139 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 |||| |||||||| |||||||||||||| |||||||| ||||||||| | |||| || | Sbjct 7140 CTTT-TGTGCTATATTTTGGCTTAAGAAACGTGGATTAATGCCTGGATTAACATTTTCTA 7198 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAA 132023 || || | || || |||||||||| | ||| | || |||| ||| | |||| || Sbjct 7199 ATGAACTAATATCTAGAGATGAAGGTATTCATGCGGACTTTGGATGTTTACTTTATAAAA 7258 Query 132024 AATTTGCTGATAAACTT-GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGAT 132082 ||| | || ||| ||| || | || || || ||||| ||||| ||||| Sbjct 7259 CATTAAATAATCGTCTTCCATGTGAA-AGAGTTCAAGAAATTATAGCAGAAGCTGTTGAA 7317 Query 132083 ATCGAGAAGGAGTTTATTA-CAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA 132141 | || | | | || ||| || | || ||| || | |||||||||||| || Sbjct 7318 GTTGA-ACGTACATTTTTATGTGATTCATTACCTGTAGATCTCATTGGGATGAATTCTAG 7376 Query 132142 CTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTC 132201 | ||| | || |||||||| ||||||||||||||| | || | ||| ||| Sbjct 7377 ATTAATGGCCCAATATATTGAATTTGTTGCTGATCGTTTACTGTTTGCAC-TAGATGTTC 7435 Query 132202 C-AAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTA 132260 | ||| | || || | || || | | |||||||| ||||| | |||||| Sbjct 7436 CAAAGTTATACAATGTCACGAATCCATTTGATTGGATGGATCTTATTTCATTACAAGGTA 7495 Query 132261 AAACGAACTTCTTCGAAAGTCGTGTATCTGAGTAC 132295 |||| ||||| || || | || ||| |||| ||| Sbjct 7496 AAACTAACTTTTTTGAGAAACGAGTAGCTGAATAC 7530 >seq62 Length=14813 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT--ATATTCAGTT 279914 |||||||| || | || ||||| || || ||| ||| | || || |||||| || Sbjct 9232 TCTATTCCAAATGTTATAGATGGATTAAAGCCTGGACAAAGGAAAGTTTTATATTCTGT- 9290 Query 279915 GTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAG 279974 |||| ||||||| | ||| | |||| || || || ||||| ||||||||| | | Sbjct 9291 GTTTAAAAAGAAGCTGAATAATG-AAATGAAAGTAGCACAATTAGCTGGTTATGTTGCTG 9349 Query 279975 AACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCC 280034 ||||| | || ||||| |||||||| ||| | || || | |||||| | | || | Sbjct 9350 AACATAGTGCATACCATCATGGTGAAGCTTCTTTACAGAGTACGATTGTAAATATGGCGC 9409 Query 280035 AAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGT 280090 |||||||| | | ||||| || || | ||| ||| ||||||||||||| Sbjct 9410 AAGATTTTGTTGGAAGTAACAATTTGAACTTACTTCAGCCATGTGGTCAATTTGGT 9465 >seq1117 Length=51159 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | |||||||| | ||||||||||| ||||||||||| |||||| Sbjct 34720 ACTTTTAGATTTAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTTGATGGTGATGAA 34661 Query 305465 ATGAATATGCATGTACCTCAA 305485 ||||| | ||| | |||||| Sbjct 34660 ATGAACCTCCATATGCCTCAA 34640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186790933715918