Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1249 378 1e-99 seq196 239 6e-58 >seq1249 Length=14599 Score = 378 bits (418), Expect = 1e-99 Identities = 1217/1866 (65%), Gaps = 42/1866 (2%) Strand=Plus/Plus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 || ||| | || ||||| ||| ||||| | ||| ||||||| ||||| ||||| Sbjct 11507 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 11566 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | | ||| || | ||| | | || || |||| |||||| | || ||| |||| Sbjct 11567 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 11626 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTCTTTTGAGGAATTTCCCAAA 68578 ||| | | |||||||||||||||||| | |||| | || ||||| ||||||||| | Sbjct 11627 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCT-TTTTGTCTAATTTCCCAGA 11685 Query 68579 TAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGATCCAC 68635 || || | | | ||||| || | | ||| ||||||||| |||| Sbjct 11686 CGGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCAT 11745 Query 68636 CATCGGATATAATTATATTCTTGA-TCTCATCATTCCACAATTTTCTCTCCGTTAAAACT 68694 | | || || | | || | |||| |||| ||| | | || |||| | Sbjct 11746 TGTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCA 11804 Query 68695 CTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | | | ||| ||||| || | || |||||||| || || | | | || ||| Sbjct 11805 TTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATA 11864 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || |||| ||||||| | ||||||||| || || | |||| || ||||| || Sbjct 11865 TTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTA 11924 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| || || ||||| || |||||||| |||| | ||||| || || || Sbjct 11925 GGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGT 11984 Query 68875 TGTTTCCAATCCCAAAGATCAGATG---GTACAACATTCCAAAGATCGTATTGTAGAATT 68931 | ||| | |||||| | || | || |||||||| ||||| ||||||| | Sbjct 11985 AAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGA 12044 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || |||| || ||| || | | |||||||||| || || | || || ||||| ||| Sbjct 12045 CCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCA 12104 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTG 69050 |||||||| || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 12105 CAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG 12164 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 || ||| | || ||||||| || | ||||| |||||| | || || || Sbjct 12165 -GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTAC 12223 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT-TCTGGAATAGGATAAT 69169 || | ||| | || ||||||||| ||| || || | || |||||||||||||||| Sbjct 12224 TCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAAT 12282 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 | | ||| |||| || ||| ||||| | | |||| || || || || | ||| | Sbjct 12283 ATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCT 12342 Query 69230 TGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACAGATGCTA 69283 | |||||| ||| || |||| |||||| | || ||| |||||| | Sbjct 12343 TTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCA 12402 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 ||||||||||| ||||| || ||| | | ||| | || || |||||||||||||| | Sbjct 12403 AGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGC 12462 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 || |||| || || ||||||||||| ||||| || || ||| || ||||| || Sbjct 12463 TAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGC 12522 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGAC--CCT 69461 |||||| |||||||| || ||||| || || | ||| | ||||| || || Sbjct 12523 AAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAACCACAAACT 12577 Query 69462 ---AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGT 69516 || || ||| | | | || ||| | ||||||||||| ||| ||||| | Sbjct 12578 TTGTGCTTTAATT--GTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 12635 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 | |||| || ||||| ||||| | || ||||| ||||||| |||||||| |||| | Sbjct 12636 TTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTC 12695 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || |||| | || |||| | ||| || ||||| || ||||| || ||| ||| Sbjct 12696 CAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAAT 12755 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||| | | ||| | || || || || || || | | || | ||| |||| | Sbjct 12756 ATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAA 12815 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||| | |||||| ||||| | ||| | || | | ||| | ||| ||| || Sbjct 12816 ACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCT 12875 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | || | || || | |||||| || | |||||| ||||| | ||||||||| Sbjct 12876 TGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGAC 12935 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||||| || ||| || || |||| || || |||||| || || | ||| Sbjct 12936 CTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCT 12995 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGA---GCACAACGTTTCAATGTGTCATATATACCC 69933 | ||| || || | || | ||| | ||||| || | ||| ||| | || || Sbjct 12996 AATCCACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCA 13052 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || |||||| ||| || |||| |||||| ||||| || | | | ||| Sbjct 13053 TCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTA 13112 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| |||||||| |||| || ||||| || | || | ||| ||||| | || Sbjct 13113 CCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAA 13172 Query 70054 GTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 |||||||| |||| ||||||| | | || || || | ||| | ||| || | Sbjct 13173 GTTTCAATTGCTGCATCTATATTACCATAGTGGATACCACAGGAGACTCTCATTAATAGG 13232 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 || || || | ||| || | |||| || | || | || ||| |||| ||||| Sbjct 13233 TGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTC 13292 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACAGAATTTAGTTT 70232 ||||| ||||||||| ||| ||| || | | |||| |||||| || |||| | | Sbjct 13293 TTAAAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTAATCT 13351 Query 70233 ATCCTT 70238 ||| || Sbjct 13352 ATCTTT 13357 >seq196 Length=8782 Score = 239 bits (264), Expect = 6e-58 Identities = 606/902 (67%), Gaps = 25/902 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 39326 |||||| ||| |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 7535 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||||||||||| | || |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| ||||||| ||||| || |||| ||| ||| || ||| | | | | | Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 7415 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | | ||| ||||||||||| || ||| ||| | | | ||||||| || ||||| | Sbjct 7414 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 7355 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 || |||| | || || ||| ||| | || || || |||| ||| || Sbjct 7354 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATTT 7295 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGC--AATAAATGTTTAA-ACATTAAGCAGGCGA 39623 | ||| || |||| || || | | | ||||||| | | | ||| || | | Sbjct 7294 CTTGAACT--CTT-TCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCCAA 7238 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 |||| ||| | || ||||||||| |||| ||| ||||||||||| | |||||||| Sbjct 7237 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 7178 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCT 39742 ||| ||||| || || ||||||||||| ||| |||||| | |||||||| ||||| ||| Sbjct 7177 TTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACCT 7119 Query 39743 TCTACTGCTGCAAATGCAACAAGT-CTCTCTCCGTAACT--TGTATCATTATGTATCCAC 39799 || ||||| |||| || ||| | |||| || | || | || ||||| |||||| Sbjct 7118 TCAACTGC-ACAAAAGC--CAATTACTCTTTCTGCAAATGACCGATTATTATTCATCCAC 7062 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || |||||| || || || | || || || | | ||| || | ||| || Sbjct 7061 TTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAAAGC 7002 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 || || | |||| | |||| ||| ||||| || ||| |||| Sbjct 7001 ATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTCACTG 6942 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || | || || || || |||||||| ||| | ||| ||||| ||||| | | Sbjct 6941 TGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTTGAATC 6882 Query 39980 T-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 | || | ||||| || | || || || || | || |||||||||||||| |||||||| Sbjct 6881 TCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAAAA 6823 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGT--GTCAATTTATTCCAGTCATTG 40096 ||| || |||| ||||||||||| |||||| || | | || | | ||| || | Sbjct 6822 TGCTAAGACATATTTAATAAAATGTTTTTC--TGGTTCCTTTAAACTTTCCCAATCTCTC 6765 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 || || | || ||||| ||||| || |||||||| || || ||| | ||||||||| Sbjct 6764 ATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTAC 6705 Query 40157 AT 40158 || Sbjct 6704 AT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896452814320