Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq196 181 8e-41 seq1058 127 2e-24 >seq196 Length=8782 Score = 181 bits (200), Expect = 8e-41 Identities = 561/853 (66%), Gaps = 25/853 (3%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| |||||||||||||| | | || ||||||||||| |||||||| | ||||| Sbjct 6694 ATGTGGTCAATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTA 6753 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTG 43849 | | ||| | | ||||| ||||| || ||||||||||||||| | Sbjct 6754 GGTCAGGACATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATAT 6813 Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || |||||||| || || || || || || | || || || | | || ||| Sbjct 6814 GTCTTAGCATTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCT-GTAAATTT 6872 Query 43910 GCGCAAGAAG-TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||| || ||||| || |||||| || | |||||| ||||||||||| || || Sbjct 6873 TTTAAAGGAGATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGA 6932 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 | ||||| |||| || ||| | || ||| || || ||||| | || Sbjct 6933 GCAGATTCACAGTGAAACTTATTCCCTTTTAATTGATCAATATATATCAGATGTAAAAGA 6992 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 || | ||| | || ||| | |||| || ||||| ||| ||||| || Sbjct 6993 TCGCCAAATGCTTTTTGAAGCAATATCACATTTACCAGCAGTTAAAACTAAGGCAGAATG 7052 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACG---ACTTGTCGCGTTTGC 44145 ||| || ||||| ||| ||| || |||| |||| | | ||| | | ||| Sbjct 7053 GGCAACAAAGTGGATGAATAATAATCGGTCATTTGCAGAAAGAGTAATTGGCTTTTGTGC 7112 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 |||| ||||| || || ||||| || | | |||| || ||||||||| | ||||||| Sbjct 7113 AGTT---GAAGGTATCTTGTTTTCTGGCAGCTTTTG-TGCTATATTTTGGCTTAAGAAAC 7168 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | || || |||||||| || || ||||| ||||| ||||| | | |||||||| | | Sbjct 7169 GTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTATTC 7228 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAA--GCCTT-CATGTA 44321 || || |||| | | |||||| ||| | | |||| | ||| ||||| Sbjct 7229 ATGCGGACTTTG---GATGTTTACTT---TATAAAACATTAAATAATCGTCTTCCATGTG 7282 Query 44322 AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAAC--AAGAATTTATGACAAC 44379 | | | || ||| ||| | | ||| || || | | |||| | |||||| | Sbjct 7283 AAAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGTACATTTTTATGTGA-- 7340 Query 44380 AGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATA 44439 ||||||||||| || | || || |||||| || ||| |||||||||||||| Sbjct 7341 TTCATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCCCAATATATTGAATT 7400 Query 44440 CATTGCAGATCGTTTACTTTTGGAACTGGGT-TGCGATAAACACTATATTGTACAAAACC 44498 |||| ||||||||||| || | ||| | | | | | || || | ||| || | Sbjct 7401 TGTTGCTGATCGTTTACTGTTTGCACTAGATGTTCCA-AAGTTATACAATGTCACGAATC 7459 Query 44499 CGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCG 44558 | ||||||| ||||| |||||| || |||| ||||| ||||||||||| ||||| | Sbjct 7460 CATTTGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTTTTTGAGAAACGAG 7519 Query 44559 TTGGAGAATATCA 44571 | | ||||| || Sbjct 7520 TAGCTGAATACCA 7532 >seq1058 Length=37125 Score = 127 bits (140), Expect = 2e-24 Identities = 383/584 (66%), Gaps = 33/584 (6%) Strand=Plus/Plus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 ||||| || || || ||| |||||||||||||| ||| || | ||| || | | Sbjct 11756 TATGGTCCTCCAGGAACTGGTAAAACATTAATTGCAAGACAAATAGCAAAAGTATTGAAA 11815 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| || ||||| ||||| || || || || ||||||||||| || ||| Sbjct 11816 GCAAGAGAACCA---AAGATTGTGAATGGACCAGAGATATTGAATAAATATGTTGGGCAA 11872 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 ||||||||| ||||| | | ||| ||| ||||| |||||| | | || ||| Sbjct 11873 AGTGAAGAAAATATACGAAATCTTTTTTATGAAGCTGAGGAAGAATATAGACAAAAAGG- 11931 Query 19537 CGCAAAAGTTCTTTG-----CACATTATAATACTAGATGAATTGGACGCAATCTGT--AA 19589 | | || | || |||||||| || |||||||| | || ||||| ||| || Sbjct 11932 ----AGATTTTTCTGCACTTCACATTATTATTTTAGATGAAATAGATGCAATATGTAAAA 11987 Query 19590 GC-------AAAGAGGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCC 19642 || ||| | || || || || ||| | | |||| |||||||| Sbjct 11988 GCCGTGGTACAAGTAATAGTGTTGGGTCAGGTGTCAGTGATAGTATTGTTAATCAACTTT 12047 Query 19643 T--GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | || || ||| || |||||||| | |||||||||||| ||||||| ||||| || Sbjct 12048 TAAGT-AAGATT-GATGGTGTTAATAGTATTAATAATATTTTACTTATTGGTATGACAAA 12105 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 ||| || || || ||||| || |||||| |||| || | || ||| | | || || Sbjct 12106 TAGGCTTGATTTGATAGATGAGGCATTATTAAGACCTGGAAGATTTGAAGTTCATATTGA 12165 Query 19761 AATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC--ATCAACC 19818 |||| ||||| || || |||| | ||||| ||| | || ||||| | ||| Sbjct 12166 AATTGGATTACCAAATAAAAGTGGTAGACATGAAATATTAGAAATTCATACGAAGCAA-- 12223 Query 19819 ATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACC 19878 ||| || ||||| | | |||| | |||||| | || ||| | |||| || Sbjct 12224 ATGAGAGAAAATCATCGTTTAGCAGCTGATGTATGTTTATTAGAGTTAGCAGATAAAACT 12283 Query 19879 AAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGC 19922 || || | | || ||||| |||| |||||| | || || || Sbjct 12284 AAGAATTTTTCAGGTGCAGAGATTGAAGGATTAATTAGAGCTGC 12327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449034335190