Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1249 118 1e-21 seq62 82.4 1e-10 >seq1249 Length=14599 Score = 118 bits (130), Expect = 1e-21 Identities = 450/698 (64%), Gaps = 9/698 (1%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| || |||||||||||| ||||||||| || | | || | || || Sbjct 11859 TATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGAT 11918 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || |||||||| || | ||| | ||| | ||| || | || || ||| Sbjct 11919 GCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCC 11978 Query 110828 TTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || | |||||||| | ||| |||| |||| ||| || ||| | ||||| || Sbjct 11979 TTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATT-CCAGAGATCAAATTG 12037 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 |||| ||| || || ||||| | ||| |||||||||| ||| | || || Sbjct 12038 TAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGC 12097 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||||| || || || || | || | || || || ||||| || | |||| | Sbjct 12098 TAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAG 12157 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | | |||| || | || ||| ||| || | | | ||||| ||| || ||||| Sbjct 12158 TTTCCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACC 12217 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 111122 ||| || || ||||||| || || |||| || ||||||| || ||| ||| || | Sbjct 12218 TTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGAC-CTCCTGCACTCTGGAATAG 12276 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 ||||| | | ||||| ||| |||||||| | || | | |||| | ||||| Sbjct 12277 GATAATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCAT 12336 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 || |||| | |||| || | | | || || ||| | || || | || | Sbjct 12337 ATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAG 12396 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACAT 111301 ||||||| || ||||| || ||| | | | || || ||||| | ||||||||||||| Sbjct 12397 ATGCCAAGTTACAAACTGCGACCTCGT-TTGAACTAGTATACTCCATAATTTCTGTACAT 12455 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||| | || ||||| |||| ||| | ||| || || || || |||||| Sbjct 12456 AGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCC 12515 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || ||| || | || || || ||||| | ||||| Sbjct 12516 TTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGA 12553 >seq62 Length=14813 Score = 82.4 bits (90), Expect = 1e-10 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 181828 TACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGG 181887 ||||||||||||||||||||| ||| | ||| | ||||| || | | || | | Sbjct 9466 TACCAAATTGACCACATGGCTGAAGTAAGTTCAAATTGTTACTTCCAACAAAATCTTGCG 9407 Query 181888 CCAACTTAACGATGGTA-TCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACT-TG-T 181944 ||| || || || ||| || | || || ||||||| || ||||| || ||| || | Sbjct 9406 CCATATTTACAATCGTACTCTGTAA-AGAAGCTTCACCATGATGGTATGC--ACTATGTT 9350 Query 181945 CCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGC 182004 | |||||||| | || || ||||| || |||||||||| || || ||||| | || Sbjct 9349 CAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCATTATTCAGCTTCTTTTTAAACA 9290 Query 182005 AAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 || ||| | |||||||| || |||||| | ||||| Sbjct 9289 CAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATCCATC 9250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020711124800