Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1249 190 2e-43 >seq1249 Length=14599 Score = 190 bits (210), Expect = 2e-43 Identities = 611/937 (65%), Gaps = 11/937 (1%) Strand=Plus/Minus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 || || || || |||||| || ||||| | ||||||||||| || || | ||| | Sbjct 12955 ATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGTGTATAATGAT 12896 Query 104567 ACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAA---AGGGATCTATCGCAGTCTATCTT 104623 ||||| || ||||| | |||| ||| | || |||| | | || |||||| | Sbjct 12895 ACAGCACGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGCTGTCTATTTG 12836 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || || ||||| |||||| | |||| || | ||| | | ||||| ||| | ||| Sbjct 12835 GAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCATGGTAAAGAG 12776 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 ||| | | ||||| ||| | || | || || ||||| || ||||| |||||| ||||| Sbjct 12775 GAGATGAGATGCCGTGATATATTTCCAGCACTATGGATACCTGATCTGTTCATGGAGAGA 12716 Query 104744 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA 104802 || ||| || || || ||| | | | ||||| || || || ||||| | || Sbjct 12715 GTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGC-CCTGGGATGCAAGA 12657 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 || | |||||| | ||| ||| | || | | || || |||||||||| | | Sbjct 12656 TGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAGGTCGCGGTAG 12597 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 || | ||| | ||||| || | || |||| |||| ||||| || Sbjct 12596 GAAAACAATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAATTGAGACAGG 12537 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982 ||| |||| || || || || || ||| | || || |||||| | ||| |||| Sbjct 12536 TACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAACAAAATCTGGG 12477 Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC-AGACAAAGATGAGA 105041 | ||| || | |||||| ||||||||||| |||| | ||| || || | ||| Sbjct 12476 TACGATAAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTTCAA-ACGAGG 12418 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 || || |||||| | ||||| || | ||||| | ||| ||| || | |||| Sbjct 12417 TCGCAGTTTGTAACTTGGCATCTATAGGGCTCCCTCGTTTTGTTGATAGGGATAATAAGA 12358 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA-AACCTAAACAGA 105160 ||| |||| | |||| || | ||||| | ||| | || ||| || ||||| | Sbjct 12357 AATTCGATTTTAAAAAGCTATATGAAGT-AGTAAAGGTAGCAACAAGGAATCTAAATGAA 12299 Query 105161 GTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCG 105219 ||||||||| | | ||| || || ||| ||| | | |||||| ||||||| | Sbjct 12298 GTTATTGATCGTGGATATTATCCTATTCCAGAGTGCAGG-AGGTCTAATCTGAGACATAG 12240 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT 105279 ||| ||||| | || || || ||||| || ||| || || | | | | ||| Sbjct 12239 GCCACTTGGTTTAGGAGTACAAGGTCTTGCAGATTGTTTTATGATATTGAGATATCCATA 12180 Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339 ||| || | || || | | || | |||| ||||||||||| || || | || || Sbjct 12179 TGAATCTAAAGATGCCAGGAAACTAAATGTTGAGATATTTGAGACAATATACTATGCTGC 12120 Query 105340 TCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 |||||| || |||| ||| | |||||| ||||||| |||||||| ||| | ||||| Sbjct 12119 TCTTGATGCAAGTTGTGAGCTAGCAGAGAAGTATGGTCCCTATGAAACATTTCAAGGTTC 12060 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 105436 |||||| ||| |||| ||||||||| | ||| Sbjct 12059 ACCAGCTAGTAGAGGTCTGCTACAATTTGATCTCTGG 12023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250315887120