Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq62 111 7e-20 >seq62 Length=14813 Score = 111 bits (122), Expect = 7e-20 Identities = 292/439 (67%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 64890 ATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAA 64949 |||| || |||||||| | | || || | ||| | ||| ||||| |||||| |||| | Sbjct 9670 ATCCAGTACCAATACCATCAGCACCGTTAACTAAGACCATTGGAATGATTGGTACATAGA 9611 Query 64950 AGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAA-AATGGCATCATCCTCT 65008 | | ||| |||| |||||||||| | || ||| | || ||||| |||||| || Sbjct 9610 ATAAAGGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGG-ATCATCAGCT 9552 Query 65009 TTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGA---T 65065 | ||| || ||| ||||||| || |||| ||| | || || | | | | Sbjct 9551 TCTGGGAAAATATAACGAGTCCAAGTAGATAATTTTGTAAATATGTAACGGGCAGCACTT 9492 Query 65066 GCGTGGTCTTGTCCAGTTCGT-CGTGTT-CCAAACTGACCATTTGGCATTAATAAATTAA 65123 || | |||| | ||| | | || | ||||| |||||| |||| | ||| || | Sbjct 9491 GCATC--CTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGTTCA 9434 Query 65124 TATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTT 65183 |||||| |||| ||||| || ||||| | ||| | | |||| |||| Sbjct 9433 AATTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAGCTT 9374 Query 65184 CACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTT 65243 |||| ||||| ||| | |||||||| ||||| ||| ||||| || ||||| |||| Sbjct 9373 CACCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCATTT 9314 Query 65244 CCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATC 65303 | | | | ||||||||||| ||||||| || | ||||| | | | || |||| Sbjct 9313 CATTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATC 9254 Query 65304 CATCCATTAAATTAGGAAT 65322 |||| || | ||| ||||| Sbjct 9253 CATCTATAACATTTGGAAT 9235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235675869560700