Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq581 150 2e-31 seq431 150 2e-31 seq1249 102 9e-17 >seq581 Length=7318 Score = 150 bits (166), Expect = 2e-31 Identities = 177/237 (75%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 ||||| || ||||| || ||||| ||||| | || || || || || || ||||| || Sbjct 1408 TATTA--ATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGT 1351 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||| || ||||| |||| |||| | |||||||||||||| || || || || ||||| Sbjct 1350 TGAACCATCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCC 1291 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || || || || | ||||||||||||| || ||||| ||||||| ||| || || | Sbjct 1290 ACCTGATCAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATC 1231 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||| | || |||||||| || |||||| |||| || ||| | | ||||| Sbjct 1230 TGATTATAATATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTTAAGAGGTGG 1175 >seq431 Length=1763 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || || || |||||||| | || ||||| | Sbjct 338 AATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTGAACCTTC 279 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| || || || |||||||||||||| |||||||| || Sbjct 278 TGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTCCAGATCA 219 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| |||||||| |||||||| || |||| | || || ||||||| || Sbjct 218 ACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAGACTACAA 159 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| || ||| | ||| |||| ||| | | || ||||| Sbjct 158 TATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGG 111 >seq1249 Length=14599 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 80068 CCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCA-AGTGTGGGGTTCTCCAT 80126 ||||||||||| || || | |||||||||| ||||| ||| ||| ||| || | || Sbjct 11541 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGT-TGGCATTTGCAAT 11599 Query 80127 GAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186 | || || ||||||||||| ||||| ||| | | || | |||||||||||| ||||| Sbjct 11600 ATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAAT 11659 Query 80187 AATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || |||||| ||||||||| || || Sbjct 11660 AACTGCTTTTTGTCTAATTTCCCAGACGGT 11689 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/281 (67%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240 ||||| || | ||| ||||| | ||||| | || |||||||| || |||||| Sbjct 12669 GGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAAC 12728 Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300 ||||| ||||| || || | || | || ||||| | | |||||| | ||| ||| Sbjct 12729 AGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGG 12788 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || | | ||| | ||| |||| | ||||||||||| || |||| ||| || || Sbjct 12789 TTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCA 12848 Query 81361 ATCGACCCCTTGC---GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | ||||| | | ||||| |||| || ||||| || || | ||| | ||| Sbjct 12849 AGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACA 12908 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACC 81458 |||| ||| || || | ||||| ||| ||| || ||||| Sbjct 12909 CGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACC 12949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300148670560