Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq431 145 5e-30 seq581 127 1e-24 >seq431 Length=1763 Score = 145 bits (160), Expect = 5e-30 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 23604 ACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 |||||| |||||| ||||| ||||||||| | || || ||||| || || | ||||||| Sbjct 345 ACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTG 286 Query 23663 ACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 | | | || || |||||| |||| ||| || ||||| || || |||| | Sbjct 285 AACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTC 226 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 |||||||||| |||||||| ||||| || || ||||| ||||| | | |||||| | Sbjct 225 CAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAG 166 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| || || || ||||| || |||||||||||||| ||||| || || || Sbjct 165 ACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGG 111 >seq581 Length=7318 Score = 127 bits (140), Expect = 1e-24 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| ||||| || || || |||||||| | | Sbjct 1400 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 1341 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| |||| |||||| || |||||||| | || || |||||| Sbjct 1340 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 1281 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||| ||||| || |||||||| || || | || |||||| ||||| || Sbjct 1280 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 1221 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATC-AGCAGTTAA 23849 || || || || || || || |||||||||||| | || |||| || || ||| |||| Sbjct 1220 ATTCAGAAGGAATCAACCTT-CATTTAGTTTTACGTTTAAGAGGTGGTTCTTGCAATTAA 1162 Query 23850 AGAT 23853 | || Sbjct 1161 ATAT 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003676170504