Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq196 224 8e-54 >seq196 Length=8782 Score = 224 bits (248), Expect = 8e-54 Identities = 580/862 (67%), Gaps = 39/862 (5%) Strand=Plus/Minus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||||||||| | |||||| || || || || |||||||| |||| ||| |||||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||| ||||||| ||||| || | ||||| | ||| ||| | ||| || | || Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACA-TCTAGTGCAAACAGT 7416 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 || || ||||| |||||||| ||||| ||| ||| | | | || || ||||| | | Sbjct 7415 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 7356 Query 4436 TCTCACAGGTAGCGCGTATGTCA-AAAACTCTT-GTTCTATAGTTACGGCTTCTGTGATT 4493 ||| ||||||| | || || |||| | | |||| | || ||||||| || Sbjct 7355 TCT-ACAGGTAATGA--ATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATA 7299 Query 4494 ATATCTTTTATTTTATCTT-TAGATG--GTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || |||| | | | || | || | | ||||||| | || | || | |||||| Sbjct 7298 ATTTCTTGAACTCTTTCACATGGAAGACGATTATTTAAT--GTTTTATAA-AGTAAACAT 7242 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||| || ||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct 7241 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 7182 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||||||| || | || ||||||||||||||||| ||| |||||||| || || Sbjct 7181 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATA 7122 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || ||| | | || || | || || | || | || ||| Sbjct 7121 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGA---TTATTATTCATC 7065 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTTAAA 4789 || ||| |||||| | || || | ||||| || | || |||| |||| || | ||| Sbjct 7064 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTG-ATATTGCTTCAAA 7006 Query 4790 TA--ATTT----ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | |||| | |||| || ||| ||||| || |||| ||| ||| Sbjct 7005 AAGCATTTGGCGATCTTTTACA------TCTGATATATATTGATCAATTAAAAGGGAATA 6952 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||| || || | || |||||||| |||||||| ||| | |||||||||| Sbjct 6951 AGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTC 6892 Query 4904 TACTTGAA-CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 || ||||| || | ||| ||||| || | ||||||| || |||| || || ||||| | Sbjct 6891 TATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAG 6833 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTT 5019 |||||||||| || || |||| || ||| | |||| || || ||| | ||| Sbjct 6832 CTGCAAAAAATGCTAAGACAT---ATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTT 6776 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| | || || | | |||||| | ||||| |||||||||| || ||||| Sbjct 6775 CCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTT 6716 Query 5080 CTTTTTTGTACATAGACCAAAT 5101 ||||||||||||| ||||| || Sbjct 6715 CTTTTTTGTACATTGACCACAT 6694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427042115688854