Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1249 412 5e-110 seq196 246 4e-60 >seq1249 Length=14599 Score = 412 bits (456), Expect = 5e-110 Identities = 1244/1904 (65%), Gaps = 53/1904 (3%) Strand=Plus/Plus Query 76780 ATGTAAACTGAATTGGAGAAGAT-----GCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 || || | ||||||| | | ||| ||| || ||| | || ||||| |||||| Sbjct 11474 ATCTATAGTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGT 11533 Query 76835 TTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATC 76894 ||||| |||| ||||||| ||||| ||||| | || || | ||| | | || Sbjct 11534 TTTTAAACCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATT 11593 Query 76895 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || |||| |||||| | |||||| |||| ||| | | ||||||||| |||||||| Sbjct 11594 TGCAATATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCAT 11653 Query 76955 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 77014 | |||| | ||||| ||||||||| | |||||| | | | | | | ||| Sbjct 11654 ATCAATAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACA---GGTCGCGAATATC 11710 Query 77015 TGGAAGGTTTG------TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTAT 77068 | | | | | ||||||||| || |||| || || | || || || | | Sbjct 11711 TCGCGGTATAGACTCAATATTTTGAAC---ACTTCCAT-TGTTAGCAATG-ATACTCTGT 11765 Query 77069 ATCA-----TCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 ||| |||| ||| | | | || |||| | | | | ||||||||| || Sbjct 11766 TTCAGTCTCTCATCCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACA 11825 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | || || ||||||||||| | | | || ||||| |||| ||||||| | Sbjct 11826 ACAAAGAACTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAG 11885 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||| || || | | |||| ||||| || || ||||| || || ||||| || Sbjct 11886 CTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAAC 11945 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 ||||| || |||| | ||||| || || || | | ||| | |||||| || Sbjct 11946 GAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCT 12005 Query 77304 GAAG---GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || |||| ||| ||||| ||||||| | || ||||||| ||| || Sbjct 12006 GAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCT 12065 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | | |||||||||| || || | | || ||||| |||||||| || || | || | Sbjct 12066 TGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCA 12125 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGG 77479 || || ||||| || || |||| ||| || | | || || || || ||| | || Sbjct 12126 TAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGG 12184 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 ||| || | ||||| |||||| | || || ||||| | ||||| || ||||| Sbjct 12185 ATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATG 12244 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 |||| ||| || | | ||||||||||||||||| | || |||| || ||| Sbjct 12245 TCTCAGATTAGACCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATT 12304 Query 77600 GAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT- 77658 ||||| || |||| || || || || | ||| || |||||| ||| | || Sbjct 12305 TAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATT 12364 Query 77659 ----CTAT-AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 |||| |||||| | |||||||||| | ||||||||||| ||||| || Sbjct 12365 ATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTT 12424 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | | | ||| | || || || ||||||||||| ||| |||| || || |||||||| Sbjct 12425 TGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATT 12484 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||| ||||| || ||| || |||||||| |||||| ||||| || || || Sbjct 12485 TTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTC 12544 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT----TATCATAGATTTG- 77888 ||| ||||| | ||| | || || || | |||| | | || | ||| Sbjct 12545 AATTTGTGACTG-----TAGCAATGCAAACCACA--AACTTTGTGCTTTAATTGTTTTCC 12597 Query 77889 TATCGCCTC--TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACAT 77946 || ||| | ||| ||||||| || ||||| || ||||| || ||||| |||| Sbjct 12598 TACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACAT 12657 Query 77947 CATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTC 78006 | | || ||||||||||||| || ||||| |||| ||||| |||| | || |||| Sbjct 12658 CTTGCATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTC 12717 Query 78007 GTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTT 78066 | ||| || ||||||||||||||||| || ||||| ||| ||| ||| || | Sbjct 12718 TCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCT 12777 Query 78067 CATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 78126 | || || ||||| | | || | ||| |||| || ||| | |||||| ||||| | Sbjct 12778 CTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCA 12837 Query 78127 GATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGT 78186 ||| | || | | || | ||| || || || || | ||| | || || | Sbjct 12838 AATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTAT 12897 Query 78187 TATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATAT 78246 |||||| || | || ||||||||| | ||| ||||| | ||||| || ||| || | Sbjct 12898 CATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGT 12957 Query 78247 AACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATA 78306 | ||| || || |||||| || | | ||||| ||| || || |||| || Sbjct 12958 ATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTA 13017 Query 78307 TTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAA 78366 | || || || | |||||| | || || || || |||||| ||| || | Sbjct 13018 TATTTGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGA 13077 Query 78367 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 ||| |||||| ||||| || | ||| ||| || ||||| ||||||||||||| | Sbjct 13078 GAATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAG 13137 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT-GTCC 78485 |||| ||||| | || | ||| || || | || |||||||| |||| ||||| | | Sbjct 13138 CATGAGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTAC 13197 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 ||| | || || || | || | ||| || | || || || ||||| || ||||| Sbjct 13198 CATAG-TGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTA 13256 Query 78546 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 | || | || || || ||| |||| | ||| |||||| ||||||||| ||| | Sbjct 13257 TCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCA 13316 Query 78606 AAGTCTCTCTCGTAAAT-AATAACAGAATTTAGTTTATCTTTGT 78648 || || | | |||| |||||| || |||| | ||||||||| Sbjct 13317 AAATCAC-GGCTAAAATCAATAACTGAGTTTAATCTATCTTTGT 13359 >seq196 Length=8782 Score = 246 bits (272), Expect = 4e-60 Identities = 615/914 (67%), Gaps = 35/914 (4%) Strand=Plus/Minus Query 47788 TGGTTCTTTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCT--TGAGACATAACT 47843 ||||| |||||| ||| |||||| | ||||| | | | |||| |||| ||||||| Sbjct 7600 TGGTTAGTTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACT 7542 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 || |||| |||||| | || |||||||| ||||| |||||||| |||| ||||| Sbjct 7541 CCTGCCATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAA 7482 Query 47904 ATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCT 47963 ||| ||||| ||||||||||||| |||| || | ||| || ||| | | Sbjct 7481 ATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGC- 7423 Query 47964 GAAATCAGT---CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || |||| | ||| ||||| ||||| |||||| ||| | | | ||||||| Sbjct 7422 --AAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATC 7365 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATC 48079 || || || | || |||| | || | ||| || | |||| | ||||| || Sbjct 7364 CCAATGAGATCTACAGGTAATGAATCACATAAAAATGTAC-GTTCAACTTCAACAGCTTC 7306 Query 48080 CACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATAC--AACAAATGTTTAA-ACAT 48136 |||| || | || |||| || ||| || | ||||||| | | | Sbjct 7305 TGCTATAATTTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAG 7249 Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||||||| |||| || ||||| ||||||||||||| |||| ||| ||||||||||| Sbjct 7248 TAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGT 7189 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAA 48255 | || ||||||| ||||||||| || ||||||||||| || | |||| | ||||||| Sbjct 7188 TAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAA 7130 Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGT-CTCTCTCCGTAACTGGCT--TCGT 48312 | || || ||||| || || |||| || || | |||| || | || || | | | Sbjct 7129 ACAAGATACCTTCAACTGCA-CAAAAGCC--AATTACTCTTTCTGCAAATGACCGATTAT 7073 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 | | |||||| | |||||| || ||||| | || || || | | ||| | Sbjct 7072 TATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTG 7013 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | | ||| || | | || || |||| | || ||| |||||||| || Sbjct 7012 CTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAAT 6953 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 | |||| |||||| | || || || || |||||||| ||| | ||| |||||| Sbjct 6952 AAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTT 6893 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 || || | |||| | |||| | |||| || ||||| |||| ||||||||||||| Sbjct 6892 CTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAG 6833 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT----TA 48608 | |||||||||||||| |||| ||||||||||| |||||| ||| || || | Sbjct 6832 CTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC--TGG--TTCCTTTAAACTT 6777 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 | ||| || | || || | || ||||| ||||| || ||||||||||| || ||| Sbjct 6776 TCCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCT 6717 Query 48669 GCTTTTTTATACAT 48682 ||||||| ||||| Sbjct 6716 TCTTTTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656313328320