Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1249 408 6e-109 seq196 266 5e-66 >seq1249 Length=14599 Score = 408 bits (452), Expect = 6e-109 Identities = 1217/1853 (66%), Gaps = 36/1853 (2%) Strand=Plus/Plus Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462 || ||| | || ||||| ||||||||||| |||| ||||||| ||||| ||||| Sbjct 11507 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 11566 Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522 | ||| || | ||| | | || || |||| |||||| | |||||| |||| Sbjct 11567 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 11626 Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582 ||| | | ||||||||| |||||||| | |||| | ||||| ||||||||| | Sbjct 11627 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 11686 Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAAGA---TTTGTATTTTGAATGGATCCGCC 75639 |||||| | | | ||||| || | | | ||||||||| ||| Sbjct 11687 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 11746 Query 75640 ATCAGATATAATTGTATTCTTGA-TCTCATCATTCCACAATTTTCTCTCGGTTAAAACTC 75698 | || || || | | || | |||| |||| ||| | | || |||| | Sbjct 11747 GTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCAT 11805 Query 75699 TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATAT 75758 | | | ||||||||| |||| || || ||||||||||| | | | || |||| Sbjct 11806 TCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATAT 11865 Query 75759 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCG 75818 | |||| ||||||| | |||||| || || | | |||| || || || || | Sbjct 11866 TTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAG 11925 Query 75819 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGAT 75878 |||| || || ||||| || ||||| || |||| | ||||| || || || Sbjct 11926 GCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGTA 11985 Query 75879 ATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGATCGTATTGTAGAATTC 75935 | | ||| | |||||| |||| | || |||| ||||||||| ||||||| | | Sbjct 11986 AATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGAC 12045 Query 75936 CGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGC 75995 | | ||||| ||| || | | ||||||| || | || | ||| || ||||| || | Sbjct 12046 CTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCAC 12105 Query 75996 AACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGC 76054 |||| || || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 12106 AACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG- 12164 Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114 || || | ||| | ||||| || | ||||| |||||| || || || ||| Sbjct 12165 GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACT 12224 Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT-TCTGGAATAGGGTAATA 76173 || | ||||| || ||||||||| ||| || | | || ||||||||||| ||||| Sbjct 12225 CCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATA 12283 Query 76174 ATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT 76233 | ||| |||| || ||| ||||| || |||| || || || || | ||| || Sbjct 12284 TCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTT 12343 Query 76234 GAGAAAATCAAATTTTCCAT-----CTATCA-CAAACATATTAAGAGCTATAGATGCTAG 76287 |||||| ||||| || |||||| |||| | || |||||||||| | Sbjct 12344 TTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAA 12403 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 |||||||| || ||||| || | | | | ||| | || || || || |||||||| || Sbjct 12404 GTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCT 12463 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 | | || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 12464 AGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCA 12523 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-G 76466 || ||| ||||| || || ||||| ||||| | | | | ||| | ||| | | Sbjct 12524 AATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAA-ACTTTGTG 12582 Query 76467 CTTTTATTATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAA 76524 |||| ||| | || || ||| | ||| ||||||| ||| |||||| || ||| Sbjct 12583 CTTTAATTGTT--TTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAA 12640 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 || || ||||| ||||| | || ||||| ||||||| |||||||| |||| ||| | Sbjct 12641 TTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTT 12700 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||| | || || | | ||| || ||||||||||||||||| || ||||| ||| Sbjct 12701 TGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATC 12760 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 ||| ||| || || || || ||||| | | |||| || |||| || ||| Sbjct 12761 ACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATC 12820 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | |||||| ||||| | ||| | || | ||||| | ||| || || || || Sbjct 12821 CGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTC 12880 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACC 76824 | ||| | || || | |||||| || | || ||||||||| | || ||||| |||| Sbjct 12881 AACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACC 12940 Query 76825 ATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCC 76884 ||| || ||| || || ||| || || |||||| || || | |||| ||| Sbjct 12941 ATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCC 13000 Query 76885 TCCTGCCATTTTAGAGATTAGA---GCACAGCGTTTCAATGTGTCATAGATGCCCTCTAT 76941 || || | || | ||| | ||||| || | ||| ||| | ||||| || || Sbjct 13001 ACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCATCAAT 13057 Query 76942 ACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 ||||| ||| || |||| |||||| ||||| || | ||| ||| || || Sbjct 13058 TGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGC 13117 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 ||| || ||||| |||| |||||||| || | || | ||| || || | || ||||| Sbjct 13118 ATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTC 13177 Query 77062 AATAACTGCTTCTATA-TCCCATTGATGAATTCCTACA-GCGACACGCATCAACATATGC 77119 ||| |||| |||||| | |||| | || || || ||| | ||| | ||| || | || Sbjct 13178 AATTGCTGCATCTATATTACCATAG-TGGATACC-ACAGGAGACTCTCATTAATAGGTGT 13235 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || | ||| ||| |||||| || | || || || ||| |||| | ||| ||| Sbjct 13236 TGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTA 13295 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACCGAATTTA 77231 ||| ||||||||| ||| ||| || | | |||| |||||| || |||| Sbjct 13296 AAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTA 13347 >seq196 Length=8782 Score = 266 bits (294), Expect = 5e-66 Identities = 620/911 (68%), Gaps = 43/911 (5%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 46339 |||||| || |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 7593 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 7535 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||||||||||| |||| |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 7534 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 7475 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| ||||||| ||||| || ||||| || | ||| || ||| | | || || Sbjct 7474 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGC---AAACA 7418 Query 46460 GT---CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || | ||| ||||| ||||| ||||| ||| | | | ||||||| || |||| Sbjct 7417 GTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGA 7358 Query 46517 GTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 | | || |||| | || | ||| || | |||||| ||||| || | ||| Sbjct 7357 GATCTACAGGTAATGAATCACATAAAAATGTAC-GTTCAACTTCAACAGCTTCTGCTATA 7299 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGC--ATCAAATGTTTAA-ACATTAAACAT 46632 || | ||| |||| || ||| || | || ||||||| | | | ||||||| Sbjct 7298 ATTTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACAT 7242 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 |||| || ||||| |||||||||||| |||| ||| ||||||||||| | ||| Sbjct 7241 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 7182 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATAT 46751 ||||||| |||||| || || ||||||||||||| | | |||| | |||||||| || || Sbjct 7181 GGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAGAT 7123 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGT-CTCTCTCCGTAACTGGC--ATCATTATGAAT 46808 ||||| || | | | || || ||| | |||| || | || || | || ||||| || Sbjct 7122 ACCTTCAACTG-CACAAAAGC--CAATTACTCTTTCTGCAAATGACCGATTATTATTCAT 7066 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 |||| || ||||| || ||||| | || || || | | ||| || | ||| Sbjct 7065 CCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAA 7006 Query 46869 GAGAAAGtttttttCATCACT---ATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 || | ||| ||| | |||| | |||| ||| |||||||| ||| | Sbjct 7005 AAGCA---TTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGT 6949 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| ||||| | || ||||| || |||||||| ||| | ||| ||||| || Sbjct 6948 TTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTAT 6889 Query 46986 CTGTACCT-CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 || | || || || ||||| | ||| || ||||| | || |||||||||||||| | Sbjct 6888 TTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTG 6830 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT----TATTC 47100 |||||||||| || |||| ||||||||||| |||||| ||| || || | | | Sbjct 6829 CAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC--TGGT--TCCTTTAAACTTTCC 6774 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || || | || || | || ||||| ||||| || ||||| ||||| || ||| || Sbjct 6773 CAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCT 6714 Query 47161 TTTTTATACAT 47171 ||||| ||||| Sbjct 6713 TTTTTGTACAT 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921585004160