Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq581 96.9 3e-15 seq431 91.5 1e-13 >seq581 Length=7318 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 111094 TTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAA 111153 |||| ||||| |||||||| || || || || || ||||| || || | ||| ||| Sbjct 1406 TTAATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAA 1347 Query 111154 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111213 || ||| || ||| | ||||| |||||| || |||||||| |||| Sbjct 1346 CCATCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCT 1287 Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 ||||||||||| | |||| ||| || |||||| | || ||| | ||| | | ||| Sbjct 1286 GATCAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGAT 1227 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| || || ||||| || || |||||||| || ||| | | ||||| Sbjct 1226 TATAATATTCAGAAGGAATCAAC-CTTCATTTAGTTTTACGTTTAAGAGGTGG 1175 >seq431 Length=1763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 111082 ATTTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACC 111141 |||| ||||| || || ||||||||||||||| ||||| || || || ||||| ||||| Sbjct 354 ATTTGTAAGACTT-AAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACA 296 Query 111142 GTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAA 111201 | ||| ||||| ||| | ||| | ||||| ||| || ||||| || Sbjct 295 TTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAG 236 Query 111202 GGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAA 111261 || | || ||||||||| | | || | ||| || || ||| | |||||| | | Sbjct 235 GGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGA 176 Query 111262 ACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGC 111321 ||| | | || || ||||| || || || ||||| |||||||||| ||| | | || Sbjct 175 ACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGT 116 Query 111322 GGTGG 111326 ||||| Sbjct 115 GGTGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421803807495088