Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001835735.1_202016- 10-24] 1,438 sequences; 8,965,616 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq581 131 4e-25 seq431 129 1e-24 seq62 109 1e-18 >seq581 Length=7318 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || || || || |||| | || || |||||||| ||||||||||| ||||| Sbjct 1209 TTCCTTCTGAATATTATAATCAGATAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAA 1268 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | |||||| ||| ||||| || || || ||||| || || || ||||| | Sbjct 1269 AATTAATCTTTGTTGATCAGGTGGAATCCCTTCTTTATCTTGAATTTTAGCCTTTACATT 1328 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || ||||| || || | ||| ||||| || || || || |||||||| |||||||| || Sbjct 1329 TTCAATAGTATCAGATGGTTCAACTTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCAC 1388 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 1389 AAAAATCTGCAT 1400 >seq431 Length=1763 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | | | || | |||||| || || || || || |||||||| | Sbjct 110 ACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGA 169 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||| || ||||| || || |||||||| ||||||||||| || || Sbjct 170 TAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGG 229 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| |||||||| ||||| | || || || || |||| ||| || Sbjct 230 TATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAAC 289 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | || || || || || || || || ||||| || || |||||| Sbjct 290 TTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 338 >seq62 Length=14813 Score = 109 bits (120), Expect = 1e-18 Identities = 319/490 (65%), Gaps = 6/490 (1%) Strand=Plus/Minus Query 273575 CACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCC 273634 || |||| ||| |||||||||||||| || | ||||| | ||| || || || Sbjct 9720 CAGATTATTAATGATATCTTTAGGGTTATAGTTTGGAACAGAACAACTCCATCCAGTACC 9661 Query 273635 AATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTC 273694 |||||| || ||| || || | | | || || ||||| ||||| || || || Sbjct 9660 AATACCATCAGCACCGTTAACTAAGACCATTGGAATGATTGGTACATAGAATAAAGGTTC 9601 Query 273695 AATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAAC 273754 ||||| | |||||| || | || || | ||||| | |||||| | || ||||| Sbjct 9600 AATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATCAGCTTCTGGGAAAAT 9541 Query 273755 CTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCA---CTCGCATGGTCCTT 273811 | || ||| || | | ||| || || ||||| | |||| || |||| |||| Sbjct 9540 ATAACGAGTCCAAGTAGATAATTTTGTAAATATGTAACGGGCAGCACTTGCAT---CCTT 9484 Query 273812 GCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCT 273871 |||||||| ||| |||||| ||||| ||| | || |||| | ||||| || Sbjct 9483 GCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGTTCAAATTGTTACT 9424 Query 273872 ACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 || || |||| || |||||||| || || || | ||| | || | || || || || Sbjct 9423 TCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAGCTTCACCATGATG 9364 Query 273932 ATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAA 273991 || || || ||||| || | ||||||| || || || || |||| || | ||| Sbjct 9363 GTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCATTATTCAG 9304 Query 273992 GTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGAC 274051 || || || | ||||| || || |||| || ||||| || ||||| | || Sbjct 9303 CTTCTTTTTAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATCCATCTATAAC 9244 Query 274052 CGATGGAATA 274061 ||||||| Sbjct 9243 ATTTGGAATA 9234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046719914484452