Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq73 98.7 9e-16 seq54 95.1 1e-14 >seq73 Length=203464 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || || ||||| ||||| || || ||| ||||| | Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| ||||||||||| | || |||||| Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 180807 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || |||||||| || ||| ||| | | ||||| ||| Sbjct 180806 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 180747 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| |||||||| | || ||||| ||| |||| || Sbjct 180746 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 >seq54 Length=243407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/249 (69%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 28940 ATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 28999 |||||| |||| | | ||| ||||||||| || | ||||| || || || ||||| || Sbjct 218376 ATTTATTTGTAAGACT-TAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTAT 218318 Query 29000 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAA 29059 ||| ||| ||||| | || || | | || | ||| ||| || || || Sbjct 218317 TACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAA 218258 Query 29060 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTC 29119 || || | || |||||||||| | | |||||||| || || ||||| |||||| Sbjct 218257 GGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGG 218198 Query 29120 CAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 || |||| | | || ||||||||||||||||| |||||| | || | || || | || Sbjct 218197 CAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTT 218138 Query 29180 ACGAGGAGG 29188 ||| || || Sbjct 218137 ACGTGGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335295253425