Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq73 89.7 4e-13 seq54 86.0 5e-12 >seq73 Length=203464 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || || ||||| ||||| || || ||| ||||| | Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| ||||||||||| | || |||||| Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 180807 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || |||||| | || ||| ||| | | ||||| ||| Sbjct 180806 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 180747 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||| |||||||| | || ||||| ||| |||| || Sbjct 180746 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 >seq54 Length=243407 Score = 86.0 bits (94), Expect = 5e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 25013 ATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 25072 |||||| |||| | | ||| ||||||||| || | ||||| || || || ||||| || Sbjct 218376 ATTTATTTGTAAGACT-TAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTAT 218318 Query 25073 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAA 25132 ||| ||| ||||| | || || | | || | ||| ||| || || || Sbjct 218317 TACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAA 218258 Query 25133 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTC 25192 || || | || |||||||||| | | |||||||| || || ||| | |||||| Sbjct 218257 GGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGG 218198 Query 25193 CAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 || |||| | | || ||||||||||| ||||| |||||| | || | || || | || Sbjct 218197 CAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTT 218138 Query 25253 ACGAGGAGG 25261 ||| || || Sbjct 218137 ACGTGGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796124110890