Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq50 257 2e-63 >seq50 Length=135657 Score = 257 bits (284), Expect = 2e-63 Identities = 587/866 (68%), Gaps = 37/866 (4%) Strand=Plus/Minus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 13974 CCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 14031 |||| ||||||||||||| || ||||| | ||||| ||| | |||| | || || Sbjct 78118 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 78061 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | ||| |||| || ||||||||||| | |||||| | ||||||| || || || Sbjct 78060 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 78001 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | |||||| | | || ||||||| ||| | ||||| || |||||| Sbjct 78000 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 77941 Query 14152 AATCGT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 14209 || | || ||||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 77940 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 77883 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 77882 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 77823 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 14328 || ||||| ||||| || | ||||||||| ||| | || | | || ||||| || || || Sbjct 77822 ATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACC 77764 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 ||||||||| ||| | |||| || |||| |||| || || || ||| ||||| Sbjct 77763 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATCCA 77707 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAA-------TAAA----ATCCATTGTTTC-AAT 14436 ||| | |||||||| | || |||||| |||| || |||| ||| || Sbjct 77706 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGAT--ATTGCTTCAAAA 77649 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 |||||| || | ||| |||| | ||| || ||| |||||| | | | Sbjct 77648 AGCATT-------TG-GCGATCT-TTTA-CATCTGATATATATTGATCAATTAAAAGGGA 77599 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||| ||||| ||| || | |||||||| || ||||| |||||| | ||||||||| Sbjct 77598 ATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTC 77539 Query 14557 TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | ||| | ||| |||| || | || || || || | || || |||||||| Sbjct 77538 TTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACT 77479 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTT 14676 ||||||||||||||| || | | ||||||||| | || ||| | | | ||| Sbjct 77478 AGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTC 77419 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 |||||| | |||| | | ||||| || || | |||||||| || | | Sbjct 77418 CCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTC 77359 Query 14737 TTTTTTATACATTACCCATATTTCTT 14762 |||||| |||||| ||| ||| ||| Sbjct 77358 TTTTTTGTACATTGACCACATTACTT 77333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344786041800