Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq61 118 9e-22 seq50 82.4 7e-11 >seq61 Length=587635 Score = 118 bits (130), Expect = 9e-22 Identities = 361/543 (66%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGAC--GTGTACTCTACAATTTCGGTACATAG 23088 |||| || || || || ||||||| ||| || || ||||| | |||||| |||||||| Sbjct 493960 CAAG-TTACAAACTGCGACCTCGT--TTGAACTAGTATACTCCATAATTTCTGTACATAG 494016 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 ||||||| | |||||||| |||| ||| || |||||||| ||||| | |||||| Sbjct 494017 ATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTT 494076 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| || | || || || ||||| | || |||| | | || ||||| | | Sbjct 494077 ATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAAACT 494136 Query 23209 CTGAGCGTGAACACGTCGCACGTAC--CTGCCTTCTTCCTCGTACTTTTGGTACAACGCG 23266 || || | || || | ||| | ||||||| || || | || || || | Sbjct 494137 TTGTGCTTTAA-TTGT-TTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 494194 Query 23267 TCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGAC 23324 | ||||| | |||| | ||| || || || || ||| |||| |||||||| | Sbjct 494195 TTAAATTGGTCACCCCAGACA-TCTTGCATCCCAGGGCATT-CATCAGGACACATTAATG 494252 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| ||| || || || || | ||| ||| || ||||| ||||||||||| || Sbjct 494253 TCCAGTTTGCATCCTTCTCTACTC-TCTCCATGAACAGATCAGGTATCCATAGTGCTGGA 494311 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || | || ||| | || ||||||||| || |||||| | | || | ||| ||| Sbjct 494312 AATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCC 494371 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || ||||||||||| || || | || || |||| || ||| || || || Sbjct 494372 AAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCA 494431 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || || || || ||||| || || | || ||||| | ||||| || | | ||| || Sbjct 494432 CCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTA 494491 Query 23564 GAC 23566 ||| Sbjct 494492 GAC 494494 >seq50 Length=135657 Score = 82.4 bits (90), Expect = 7e-11 Identities = 347/545 (64%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638 ||||||||||| | |||||| || |||||||| | ||||| |||| | | |||| Sbjct 77347 ATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTAGGTCAGGAC 77406 Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 |||| |||||||| | || ||| | || | | ||||||||||| | || || || Sbjct 77407 ATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATATGTCTTAGCA 77466 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 ||||| || || ||||| ||||| | ||||| || | | || |||| | | || Sbjct 77467 TTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCTGTAAATTTTTTAAAGGAG 77526 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 | ||| | || || ||| | ||| ||||||||| | || || || | | || Sbjct 77527 ATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGAGCAGATTCAC 77586 Query 57819 TCAGAAATGTATTCGCT----ACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874 |||| ||||| || | | ||| ||| || || | | || || ||| | Sbjct 77587 AGTGAAACTTATTCCCTTTTAATTGATCAATATATATCAGATGTAAAAGATCGCCAAATG 77646 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || | || || | | || || | | |||||||| ||| ||| Sbjct 77647 ----CTTTTTGAAGCAATATCACATTTACCAGCAGTTAAAACTAAGGCAGAATGGGCAAC 77702 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 || ||||| || | ||| || || || || || |||| | || || || Sbjct 77703 AAAGTGGATGAATA-ATAATCGGTCA--TTTGCAGAAAGAGTAATTGGCTTTTGTGCAGT 77759 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCT 58054 |||||||| || ||||| ||||||||| || ||||||||| | |||||||| || | Sbjct 77760 TGAAGGTATCTTGTTTTCTGGCAGCTTTTGTGCTATATTTTGGCTTAAGAAACGTGGATT 77819 Query 58055 GATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGA 58114 ||||| || | || ||| || || | ||||| | || || ||| | ||| | || Sbjct 77820 AATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTATTCATGCGGA 77879 Query 58115 TTTTG 58119 |||| Sbjct 77880 CTTTG 77884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765647769200