Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq61 311 1e-79 seq50 250 3e-61 >seq61 Length=587635 Score = 311 bits (344), Expect = 1e-79 Identities = 1210/1879 (64%), Gaps = 40/1879 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 493040 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 493099 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 493100 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 493159 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 493160 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 493219 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62284 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 493220 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 493278 Query 62285 G---TTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA-TCTCATCAT 62340 | |||| |||| |||| | | || || || | || | |||| |||| Sbjct 493279 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 493337 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||||| | || |||| | | | | ||| || || || || ||| || | Sbjct 493338 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 493397 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 493398 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 493457 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 493458 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 493517 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC----GACGGTACA 62576 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 493518 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 493576 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 ||| | ||||||| | ||| |||| || || ||| | |||| ||| Sbjct 493577 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 493636 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 || || || | |||||| ||||| | |||||| || || | ||| | || || || || Sbjct 493637 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 493696 Query 62697 TCAAAGATCTTCTTATTTAG-ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||| |||| |||||| || || || || ||| ||||||| | || | Sbjct 493697 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 493755 Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 493756 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 493815 Query 62816 GATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 493816 -CCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 493874 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTAT-TA 62928 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 493875 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 493934 Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988 |||| | | | |||||||| ||||| || || ||||| || | | | || Sbjct 493935 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 493994 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 493995 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 494054 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 494055 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 494114 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63166 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 494115 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 494172 Query 63167 TTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 ||| |||| || ||| ||| || || | ||| ||||| |||| | || | ||| Sbjct 494173 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 494230 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 494231 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 494290 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 ||||| ||||| || ||| ||||| ||| | ||| ||||| || || ||| Sbjct 494291 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 494350 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 494351 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 494410 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 494411 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 494470 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTAC--CGGAGATAT-AGCCTCCACTG 63521 | ||||||||| | ||| || || ||||||| |||| |||| ||| | ||| || Sbjct 494471 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCA--- 494527 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 || || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 494528 GCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACAT 494587 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 |||| || ||| | ||||| || || ||||| ||| || || | |||||| Sbjct 494588 TTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAA 494647 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| Sbjct 494648 GAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAA 494707 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAAT 63760 | || | ||| || || | || || ||||| |||| |||||| | |||| | || || Sbjct 494708 TACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGAT 494766 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || | ||| | |||||| | ||| || || ||||| ||||| || | | | Sbjct 494767 ACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCG 494826 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | Sbjct 494827 CAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GC 494885 Query 63881 GTAAAT-AATAACCGAATT 63898 |||| |||||| || || Sbjct 494886 TAAAATCAATAACTGAGTT 494904 >seq50 Length=135657 Score = 250 bits (276), Expect = 3e-61 Identities = 618/910 (68%), Gaps = 41/910 (5%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 33290 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 78180 Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| Sbjct 78179 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 78120 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| || |||||||| | ||| || | | | || | | Sbjct 78119 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 78060 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || || ||||| |||||| ||| | | | ||||||| || ||||| Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 78000 Query 33471 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || | || |||| ||| |||| |||||| || || | || ||||| Sbjct 77999 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 77942 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATG--TAATAAATG-TTTAAACATCAAACATG 33585 | | ||| | ||||| || || | || | |||| |||| | | |||||| Sbjct 77941 TTTCTTGAAC---TCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATC 77885 Query 33586 CGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 | || | |||| || | ||| || |||||| |||| ||| |||||||| || | ||| Sbjct 77884 CAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 77826 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGAT 33703 ||||||| ||||| || |||||||||||||| | | | || | | || ||||| ||||| Sbjct 77825 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGAT 77767 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCATGTATC 33761 ||||| |||||| |||| |||| | ||| ||| | || |||| | | || ||| Sbjct 77766 ACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCATC 77709 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 |||||| ||||| || ||||| |||| || || | | ||| || | ||| Sbjct 77708 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAA 77649 Query 33822 AG---ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | | | || |||| |||| | ||| ||| || ||||| ||| || Sbjct 77648 AGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGTT 77592 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAAT 33937 || ||||| | || || || || |||||||| || | ||| |||||| || || Sbjct 77591 TCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTAT 77533 Query 33938 CTGCA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 || | || || || ||||| | | ||||| || || | || ||||||||||| |||| Sbjct 77532 TTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTG 77474 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTATTCC 34053 ||||||| || || |||| ||| ||||||| |||| |||||| ||| | | || Sbjct 77473 CAAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTTCCC 77417 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | || || | | || ||| | ||||| | ||||||||||| || ||| | | Sbjct 77416 AATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 77357 Query 34114 TTTTATACAT 34123 |||| ||||| Sbjct 77356 TTTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816537182800