Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq61 280 1e-70 seq50 221 1e-52 >seq61 Length=587635 Score = 280 bits (310), Expect = 1e-70 Identities = 1186/1850 (64%), Gaps = 60/1850 (3%) Strand=Plus/Plus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| ||||||||||| || || |||||| | || || |||||||||| Sbjct 493040 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 493099 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| ||||||| || || |||||| | || ||||| || | | ||| | ||| Sbjct 493100 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 493159 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 || || | | || ||| |||| || | | ||||| || || ||||| || | | Sbjct 493160 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 493219 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT---GGT 37032 | |||||| || ||||| || ||||| || | | | | ||||| ||| Sbjct 493220 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACA---GGTCGCGAATATCTCGCGGT 493276 Query 37033 AAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT--GTCAT 37087 | | || | || ||||| | ||||| | || || || || ||| | | ||| Sbjct 493277 ATAGACTCAATATTTTGAACACTTCCATTGT-TAGCA--ATGATACTCTGTTTCAGTCTC 493333 Query 37088 TATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | ||| |||| | | | || | || || |||| | || ||||| ||||| || Sbjct 493334 TCATCC-CATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAA 493392 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| ||||| | || ||||||||| ||| ||||||||| | ||||| Sbjct 493393 CTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATT 493452 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | || || |||||||||||||| ||||||||||| |||| | | ||||| Sbjct 493453 ATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCT 493512 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG--GG 37323 | |||| || ||| ||| || ||| || ||| | ||| | ||| | || Sbjct 493513 AAGGCCATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGG 493572 Query 37324 TT---CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || ||| | |||| ||||||| | |||| |||| ||||| ||| | | | || Sbjct 493573 TTGCACATT--CCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAAT 493630 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || ||||| || || || | | ||||| || ||||| | || || || ||||| ||| Sbjct 493631 GTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTAT 493690 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 ||||| || || || | | ||||| | | | || |||| || ||| ||| | | Sbjct 493691 ATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTAGATTCATATGGATATCTC 493750 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 |||| ||||| ||| || | ||| || || || | ||| | || |||||| || | Sbjct 493751 AATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGA 493810 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 ||||| || | ||| | |||||||| ||| || | || ||||||||| Sbjct 493811 TTAGACCTCCTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTC 493870 Query 37621 TTAACTAGTAT-TTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT--- 37676 | | || ||| || || | | | ||| | || ||| ||||||| Sbjct 493871 CTTGTTGCTACCTTTACTACTTCATAT-AGCTTTTTAAAATCGAATTTCTTATTATCCCT 493929 Query 37677 ---AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 |||||| | | | |||||| | | ||||| || || || || | | | Sbjct 493930 ATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACT 493989 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 | || | | ||||| |||||||| ||||| || ||| | || || |||| ||| ||| Sbjct 493990 AGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTG 494049 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 |||| ||| |||| | ||| ||||| ||| | || || ||| || ||||| Sbjct 494050 ATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTG 494109 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttt----- 37908 | || | | | ||| |||||| |||||||| | | ||| | Sbjct 494110 TGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAA---TTGTTTTCCTACCGCGACC 494166 Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATA 37966 |||||| ||| || | | |||||||| ||||| | | ||||| ||||| |||| Sbjct 494167 TTCTTT--TTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATC 494224 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 || || ||||| |||||||||| | ||| | | |||| || ||||| | |||| Sbjct 494225 --CCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCA 494282 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 | || | |||||||| ||||| ||| | ||||| ||| | ||| || || || | Sbjct 494283 TGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTAC 494342 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||||| |||| || ||| || || | ||| || ||||| ||||| | ||| | Sbjct 494343 CATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGA 494402 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | ||| || ||||| | || || || | || ||| | |||| | ||||| Sbjct 494403 CAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTAT 494462 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC--GGATATATAAGT 38264 | | | | ||| || | || ||||||||| | || || |||| |||| ||| | Sbjct 494463 ACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGAT- 494521 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTG---ATAT 38321 || ||||||||||||| | | || |||| |||||| ||| || ||| |||| Sbjct 494522 -CCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCA-GTCTTGCTTATAT 494579 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 | || |||| |||| |||||||| || || || || |||||| ||| || Sbjct 494580 T--TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAG 494637 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 ||||||||| ||||| || || |||| || || || |||||||| |||| || Sbjct 494638 AATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGC 494697 Query 38442 ATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATATCA 38499 ||| | || || ||| || | | | | ||| ||||| ||| | ||||||||| | Sbjct 494698 ATGAGTAAA--ATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTA 494755 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 || ||| ||||| || || ||||||| | |||||||| ||||| | || ||| Sbjct 494756 CCATAGTGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTA 494815 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || |||| ||| ||| |||||| || || | ||||||| Sbjct 494816 TCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATA 494865 >seq50 Length=135657 Score = 221 bits (244), Expect = 1e-52 Identities = 569/853 (67%), Gaps = 24/853 (3%) Strand=Plus/Minus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||| |||||| |||||| || ||||| ||||| ||||||| || ||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | ||| ||||| |||||| | | ||| | | ||| | | || Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 78059 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 | | ||| || || ||||| ||||| || | |||||| | | ||||||| || || |||| Sbjct 78058 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 77999 Query 11520 CCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCG 11579 | || || | | | | ||||| ||| | | ||| || || || || Sbjct 77998 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT-- 77941 Query 11580 ACGTTAT--AACTTCCTTAGATGGTGGATG--TAATAAATGTTTAA-ACATTAAACACGC 11634 || | |||| | | |||| || | || | ||||||| | | | |||||| | Sbjct 77940 ---TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 77884 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| || ||| | |||||| |||||| ||||||||||||||||||||||||||| || Sbjct 77883 AAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGG 77824 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| ||||| ||||| || | ||||||||||||| ||| |||||||| || || || Sbjct 77823 CATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATACC 77764 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 || || || ||| | | |||||||||| || || | || || ||||| || Sbjct 77763 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTCATCCACTT 77704 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | | ||||| || || || |||| || || | || | ||| || | | ||| Sbjct 77703 TGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATG-TGATATTGCTTCA---AAAA 77648 Query 11874 GCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 |||||| ||| | |||| || |||| ||| ||||| | ||| |||| Sbjct 77647 GCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTCAC 77588 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACACTGT 11989 ||||| | |||||||| |||||||||||||| | ||| || || ||| || Sbjct 77587 TGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTATTTGA 77529 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | ||| |||| || | ||||| ||||| ||||||| |||||||||| ||||||| Sbjct 77528 ATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAA 77469 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | || ||| ||||| | |||||| || |||| | |||||||| ||| Sbjct 77468 AATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATC-TCT 77410 Query 12110 AAATCTTTTGA--TAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 || | ||| |||||||| ||||| | |||||||| || || || ||| | Sbjct 77409 -CATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGT 77351 Query 12168 ACATTTTCCAGAT 12180 ||||| ||| || Sbjct 77350 ACATTGACCACAT 77338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524009364400