Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq50 259 5e-64 >seq50 Length=135657 Score = 259 bits (286), Expect = 5e-64 Identities = 581/863 (67%), Gaps = 31/863 (4%) Strand=Plus/Minus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| |||||| |||| ||| ||||| |||||||||||||||| | ||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 13642 CCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATAG 13699 |||| ||||||||||||| | ||||| | ||||| ||| | |||| | || || Sbjct 78118 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 78061 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 78060 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 78001 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | |||||| | | || ||||||| ||| | ||||| ||| |||||| Sbjct 78000 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 77941 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCAA 13878 | || | ||| | | || ||| |||| |||||| | ||| |||||| ||| Sbjct 77940 TTCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCAA 77882 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || ||||| || ||||||||| || ||||| || |||||||||||||| |||| Sbjct 77881 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 77822 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | ||||| ||||| || | ||||||||| ||| ||| || ||||| || || || | Sbjct 77821 TTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATACCTT 77762 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||||||| ||| | |||| || |||| |||| || || || ||| ||||| | Sbjct 77761 CAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATCCACT 77705 Query 14059 TTCTAGCCCATTCAGAtttttttttAA-------TAAA----ATCCATTGTTTCAATAGC 14107 || | |||||||| | || |||||| |||| || |||| ||||| Sbjct 77704 TTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGAT--ATTGCTTCAA---- 77651 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||| | | | ||| |||| | ||| || ||| |||||| | | | ||| Sbjct 77650 ---AAAGCATTTGGCGATCT-TTTA-CATCTGATATATATTGATCAATTAAAAGGGAATA 77596 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||| ||| || | |||||||| || ||||| |||||| | ||||||||| Sbjct 77595 AGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTC 77536 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| | ||| |||| || | || || || || | || || ||||||||||| Sbjct 77535 TATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 77476 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 |||||||||||| || | | ||||||||| | || ||| | || | ||| ||| Sbjct 77475 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCA 77416 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 ||| | |||| | | ||||| || || | |||||||| || | |||| Sbjct 77415 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 77356 Query 14408 TTTATACATTACCCATATTTCTT 14430 ||| |||||| ||| ||| ||| Sbjct 77355 TTTGTACATTGACCACATTACTT 77333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727190459000