Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq50 269 3e-67 >seq50 Length=135657 Score = 269 bits (298), Expect = 3e-67 Identities = 585/857 (68%), Gaps = 19/857 (2%) Strand=Plus/Minus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| |||||| |||| ||| |||||||||||||||||||||| | ||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 13430 CCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAATAA 13487 |||| |||| |||||||| || ||||| | ||||| ||| | |||| | || | Sbjct 78118 CCATCCAATCAAATGGATTCGT-GACATTGTATAACTTTGGAACATC-TAGTGCAAACAG 78061 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||| | |||||||| ||| ||||||||||| | |||||| | ||||||| || || || Sbjct 78060 TAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAG 78001 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | |||||| | | || | ||||||| ||| | ||||| || |||||| Sbjct 78000 ATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 77941 Query 13608 AATCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA-AAATTAAACACGCA 13665 |||| || | ||| | | || ||| |||| |||||| | ||| |||||| || Sbjct 77940 T-TCTTGAACTCTTTCACATGGAAGACGATTATTTA-ATGTTTTATAAAGTAAACATCCA 77883 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || ||||| || ||||||||| || ||||| || |||||||||||||| ||| Sbjct 77882 AAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGC 77823 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 13784 || ||||| ||||| || | ||||||||| ||| | || | | || ||||| || || || Sbjct 77822 ATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACC 77764 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 ||||||||| ||| | |||| || |||| |||| || || || || ||||| Sbjct 77763 TTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATT---CATCCA 77707 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAA-TAAAATCCATTGTTTCGATTGCATTGAATA 13903 ||| | |||||||| | || |||||| | | || | ||||| || || | Sbjct 77706 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATG-TGATATTGC-TTCAAAA 77649 Query 13904 A--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 | || || ||||| | ||| || ||| |||||| | | | ||| |||| Sbjct 77648 AGCAT-TTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTC 77590 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 | ||| || | || ||||| || ||||| |||||| | |||||||||| ||| Sbjct 77589 ACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTTG 77530 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 | |||| |||| || | || ||||| || | ||||| ||||||||||||||||| Sbjct 77529 AATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAA 77470 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGC 14141 |||||| || | | ||||||||| | || ||| | || | ||| |||||| Sbjct 77469 AAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCTCT 77410 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | |||| | | ||||| || || | |||||||| || | ||||||| || Sbjct 77409 CATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTA 77350 Query 14202 CATTACCCATATTTCTT 14218 |||| ||| ||| ||| Sbjct 77349 CATTGACCACATTACTT 77333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587992381400