Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq61 342 7e-89 seq50 253 3e-62 >seq61 Length=587635 Score = 342 bits (378), Expect = 7e-89 Identities = 1189/1838 (65%), Gaps = 30/1838 (2%) Strand=Plus/Plus Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || ||||||| ||| ||||||| || || |||||| | ||| || | |||| | Sbjct 493088 CCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTG 493147 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 | || || || | |||||| | |||||| |||| ||| | | ||| || ||||| Sbjct 493148 GCATTTGCAATATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCC 493207 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAAT 71027 ||||| | || | | |||||| ||||||||| | ||||| || | |||| ||| Sbjct 493208 GCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AAT 493266 Query 71028 ATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 |||| || | | |||| |||| |||| | ||||| || || | ||| Sbjct 493267 ATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTT 493326 Query 71085 GA-TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | ||||| ||| ||||| | || |||| | | | | ||||||||| || | Sbjct 493327 CAGTCTCT-CATCCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAA 493385 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || ||||||||||| | | | || ||||| |||| | ||||| | Sbjct 493386 CAAAGAACTCCCCAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGC 493445 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 |||||||| || | | |||| || ||||| || ||||| || || ||||| | || Sbjct 493446 TTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACA-AC 493504 Query 71264 TA-TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 | |||||||| |||| | | | ||||| || || || | ||||| |||||||| || Sbjct 493505 GAGTTTCTAAGGCCATACTTAGCT-ATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TC 493562 Query 71322 C----GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATC 71377 | || ||| || | || ||||||| ||| | Sbjct 493563 CTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAAC 493622 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || | |||| || || || || | || || ||||| |||||||| || || | || Sbjct 493623 CTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAG 493682 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAAT 71496 |||| || || || || || |||| ||| || | | || || || ||| || Sbjct 493683 CATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATAT 493741 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 ||||| | || | ||||| ||||| | ||||| || || | ||| | || || Sbjct 493742 GGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTA 493801 Query 71557 TGTCTCTTATTAGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||| |||||| | | || ||||||||||||||||| | ||| |||| || Sbjct 493802 TGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTC 493860 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||| ||||| || | ||| || || || || | ||| || |||||| ||| || Sbjct 493861 ATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTT 493920 Query 71676 AT-----CTATTACAAACACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTC 71729 || |||| | || ||| || | | |||||||| |||||||| || ||||| Sbjct 493921 ATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTC 493980 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || | | | ||| | |||||||| || || ||||| ||| | || || || || | Sbjct 493981 GTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAG 494040 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 |||||||||||| || || ||| ||||||||||| |||||| |||||||| || Sbjct 494041 ATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGT 494100 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||||| || || | || | || ||| | | | || || ||| | ||| | Sbjct 494101 CTCAATTTGTGACTGTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGTTTTCCTACC 494160 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 | |||| |||| || ||| ||||||| || || | ||| ||||| ||| | Sbjct 494161 GCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTG 494220 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | ||||| ||||||| |||||||| |||| ||| | | |||| | | ||||| | Sbjct 494221 CATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTC 494280 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || |||||||| ||||| || ||| ||||| ||| | | ||| |||||| || Sbjct 494281 CATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTT 494340 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || ||||| | | || | || ||| || ||| | |||||| |||||||| || Sbjct 494341 ACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATA 494400 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | ||| || ||| ||| || || || | || | || || | ||| Sbjct 494401 GACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATT 494460 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 ||| || | || ||||||||| | |||||| || |||||| || || ||| || Sbjct 494461 ATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGA 494520 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| || || ||||| || | | |||| ||| || || | || || Sbjct 494521 TCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATT 494580 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||| ||| |||| |||||| | ||||| || || ||||| ||| || || | Sbjct 494581 TGCACATTTCTTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAAT 494640 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 |||||| ||||| || | ||| ||| || ||||| ||||| || |||| ||| || Sbjct 494641 AAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATG 494700 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA-TCCCATT 72508 ||||| | || | ||| || || | || || ||||| |||| |||||| | |||| Sbjct 494701 AGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATA 494760 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || | ||| | |||||| | || || || ||||| || ||||| | || Sbjct 494761 G-TGGATACCACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCAT 494819 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || || || ||| |||| | ||| |||||| ||||||||| ||| ||| | Sbjct 494820 CGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAAT 494879 Query 72629 CTCGTTCGTAAAT-AATAACCGAATTGAGTTTATCCTT 72665 | || | |||| |||||| || || | | |||| || Sbjct 494880 CACG-GCTAAAATCAATAACTGAGTTTAATCTATCTTT 494916 >seq50 Length=135657 Score = 253 bits (280), Expect = 3e-62 Identities = 623/911 (68%), Gaps = 43/911 (5%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 41773 |||||| ||| |||||| | ||||| | | ||||| || |||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 78180 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||||||||| | || ||||| || ||||| ||||| || |||| ||||| ||| Sbjct 78179 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 78120 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| || ||||| || | ||| || | | | || | | Sbjct 78119 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 78060 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | ||| || | ||||| |||||| ||| | | | ||||||| || || || Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 78000 Query 41954 TTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 77999 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 77942 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTG--GATACAATAAATGTTTAA-ACATCAAACA 42066 | |||| ||| |||| || | | | ||| | | ||||||| | | | ||||| Sbjct 77941 TT--TCTTGAACTCTTTCA-CA-TGGAAGACGATT-ATTTAATGTTTTATAAAGTAAACA 77887 Query 42067 TGCGAAATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 42125 | | || || ||| || | ||| ||||||||| |||| ||| || ||||| || | || Sbjct 77886 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 77828 Query 42126 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAG 42184 | ||||||| ||||| || |||||||||||||||| | |||| | | |||||||| ||| Sbjct 77827 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAG 77769 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACTGTCATGTA 42242 || ||||| ||||| |||| |||| | ||| ||| | || |||| | | | || | Sbjct 77768 ATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCA 77711 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||||||| ||||| || ||||| |||| || || | | ||| || | || Sbjct 77710 TCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAA 77651 Query 42303 AGAG---ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | || | | | || |||| |||| | |||| ||| || ||||| ||| Sbjct 77650 AAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAG 77594 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTA 42418 |||| ||||| | || || || || |||||||| || | ||| ||| || || Sbjct 77593 TTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCT 77535 Query 42419 ACCTGTA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | || | || || || ||||| | ||||||| || || | || ||||| ||||| || Sbjct 77534 ATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 77476 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC--GTCCGGTGTTAATTTATTC 42535 ||||||||| || || |||| ||| ||||||| |||||| || | |||| | | | Sbjct 77475 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTC--CTTTAAACTTTCC 77418 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| | || || | | || ||||| |||||| | ||||||||||| |||||| | Sbjct 77417 CAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCT 77358 Query 42596 TTTTTATACAT 42606 ||||| ||||| Sbjct 77357 TTTTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138067452600