Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq54 96.9 2e-15 >seq54 Length=243407 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || | ||||| ||| || ||||| || || ||||| || || |||||||| || | Sbjct 218127 CACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTG 218186 Query 33201 ACAAATTGAGTTGGTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||| | | | |||| ||| |||||||||| ||| ||||||||||| || || | Sbjct 218187 ATAAAGT---TCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTG 218243 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 ||||| || || || || ||| ||| ||||| ||| ||| || || | Sbjct 218244 GAGGTATTCCCTCCTTGTCTTGTATCTTTGCC---TTTACATTTTCAATTGTATCAGAAG 218300 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||| || | || || ||||| || || | ||||| || ||||||||||| Sbjct 218301 GTTCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCAT 218355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777075511230