Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq50 179 3e-40 >seq50 Length=135657 Score = 179 bits (198), Expect = 3e-40 Identities = 562/849 (66%), Gaps = 31/849 (4%) Strand=Plus/Minus Query 12861 TTTGATATTC-GCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||| ||||| |||| ||| ||| ||||||||||| ||||| |||| ||| |||||| Sbjct 78178 TTTGGTATTCAGCTA-CTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 78120 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTT-TTTACACC--CTAATTCTAGT 12976 ||||| |||| || ||||| | ||| | |||| ||| | | ||| | | | Sbjct 78119 TCCATCCAATCAAATGGATTCGTG--ACATT-GTATAACTTTGGAACATCTAGTGCAAAC 78063 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | || | ||||||||||| || || || || |||||| | | ||||| || || Sbjct 78062 AGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATG 78003 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | |||||| | | || |||||| | ||| | ||||| ||||| | Sbjct 78002 AGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATA 77943 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAGATGCTTAA-ACATCATACAT 13153 || ||| | | | ||| | ||||| || || | ||| || | | | | |||| Sbjct 77942 ATTTCTTGAACT-CTTTCAC--ATGGAAGACGATTATTTAATGTTTTATAAAGTAAACAT 77886 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||| || || | |||||||||||| |||||| || || |||||||||| || Sbjct 77885 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 77826 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || ||||| |||| ||||||||||||| ||| || ||||| || || Sbjct 77825 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATA 77766 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||||||| ||| | || | ||||| || | | | ||| ||| || ||| Sbjct 77765 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGATTATTATTC---ATC 77709 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAA 13392 |||||| | ||||| | ||| || |||||| || | | | || | |||||| | || Sbjct 77708 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGT-AAATGTGATATTGCTTCAA- 77651 Query 13393 TAAATAAttt-----ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 ||| |||| | || |||| ||| | ||||| ||| || || | | ||| Sbjct 77650 -AAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAA 77595 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 |||| ||||| | ||||| || ||||| || |||||| | |||||| ||| | Sbjct 77594 GTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 77535 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | |||| || |||| || | |||||||| || | || || || |||||||| Sbjct 77534 ATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCT 77475 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTTTAACCA 13626 |||||||| || | | | |||||||| | |||||| | || || |||||| ||| Sbjct 77474 GCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTT-CCCA 77416 Query 13627 ATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTT 13686 |||| | || | |||||||| ||| || | |||||||| || || | | || Sbjct 77415 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 77356 Query 13687 CTTATACAT 13695 || ||||| Sbjct 77355 TTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981690899270