Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq54 199 9e-46 seq73 179 9e-40 >seq54 Length=243407 Score = 199 bits (220), Expect = 9e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | || ||| | |||| |||||| ||||| || ||||||||||| ||||| ||| Sbjct 218129 CCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGAT 218188 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || ||||| ||||| ||||||||||| |||| | |||||||| |||||| Sbjct 218189 AAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGT 218248 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || || || |||||||| ||||||||||| | ||||| |||||| || Sbjct 218249 ATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACT 218308 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| ||||||||| || ||||| | ||||| ||||| || |||||| Sbjct 218309 TCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 218356 >seq73 Length=203464 Score = 179 bits (198), Expect = 9e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | | |||| ||| | || ||||| |||||||||||||| |||||| Sbjct 180700 CCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGAT 180759 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | ||| || || |||||||| ||||||||||||| || ||||||||||| || Sbjct 180760 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 180819 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| ||||| || || ||||||||||| | ||||| ||||| || Sbjct 180820 ATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACT 180879 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| || | || || ||||| |||||||| Sbjct 180880 TCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396408440580