Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq61 325 5e-84 seq50 232 8e-56 >seq61 Length=587635 Score = 325 bits (360), Expect = 5e-84 Identities = 1216/1888 (64%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 493040 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 493099 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 493100 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 493159 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | || Sbjct 493160 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 493219 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62233 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 493220 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 493278 Query 62234 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 62289 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 493279 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 493337 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 493338 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 493397 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 493398 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 493457 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 493458 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 493517 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 62525 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 493518 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 493576 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || |||||| | ||| |||| || || ||| | |||| || Sbjct 493577 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 493636 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 493637 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 493696 Query 62646 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 493697 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 493755 Query 62705 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 ||||| || || | ||||| || || | ||| | || ||||||||| |||||| Sbjct 493756 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 493815 Query 62765 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 493816 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 493874 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTAC 62878 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 493875 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 493934 Query 62879 AAACATGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937 || | | || | | |||||||| |||||||| || ||||| || | | | || Sbjct 493935 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 493994 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 493995 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 494054 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 494055 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 494114 Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCTCT 63115 || | || ||| | | | || || ||| | || || | | | |||| | Sbjct 494115 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 494172 Query 63116 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 494173 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 494230 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 494231 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 494290 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 494291 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 494350 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 494351 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 494410 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 494411 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 494470 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||||||||| | ||| || || ||||||| ||||| ||| || ||| || Sbjct 494471 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 494530 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 494531 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 494590 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 |||| || ||| | || || || || ||||| ||| || || | |||||| Sbjct 494591 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 494650 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 ||||| || | ||| ||| || ||||| ||||| || |||| ||| || ||||| | Sbjct 494651 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 494710 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 63712 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 494711 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 494769 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 494770 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 494829 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 494830 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 494888 Query 63833 AAT-AATAACCGAGTTGAGTTTATCCTT 63859 ||| |||||| ||||| | | |||| || Sbjct 494889 AATCAATAACTGAGTTTAATCTATCTTT 494916 >seq50 Length=135657 Score = 232 bits (256), Expect = 8e-56 Identities = 613/909 (67%), Gaps = 39/909 (4%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCT--TGAGACATAACTCCCATTT 33013 |||||| ||| |||||| | ||||| | | | |||| |||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 78179 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||||||||||| | || ||||| || ||||| |||||||| |||| ||||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| ||||||| ||||| || ||||| || | ||| || | | | || | | | Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 78059 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | | ||| || || ||||| |||||| ||| | | | ||||||| || || || | Sbjct 78058 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 77999 Query 33194 TAACTGGAA--GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || | || | || ||| |||| |||||| || || |||| |||||| Sbjct 77998 CTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAAT 77941 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGC--AATAAATGTTTAA-ACATCAAACATGC 33308 | ||| |||| || || || | | | ||||||| | | | |||||| | Sbjct 77940 TTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCC 77884 Query 33309 GAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 || || ||| || | ||| || |||||| |||||||| || ||||| || | ||| | Sbjct 77883 AAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAG 77825 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATT 33426 |||||| ||||| || |||||||||||||| | | | || | | |||||||| ||||| Sbjct 77824 GCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATA 77766 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCATGTATCC 33484 ||||| |||||| |||| |||| | ||| ||| | || |||| | | || |||| Sbjct 77765 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCATCC 77708 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 ||||| ||||| || ||||| |||| || || | | ||| || | ||| | Sbjct 77707 ACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAAA 77648 Query 33545 G---ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 | | | | || |||| |||| | ||| ||| || ||||| ||| ||| Sbjct 77647 GCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAAGTTT 77591 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATC 33660 | ||||| | || || || || |||||||| || | ||| |||||| || || Sbjct 77590 CACTGTGAATCTGCTCCATAGCAATTTGAAATCCATA-ATACATTCTAGCTTCTTCTATT 77532 Query 33661 TGTA-CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || | || || || ||||| | | || || || || | || ||||| ||||| ||||| Sbjct 77531 TGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGC 77473 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTATTCCA 33776 |||||| || || |||| ||| ||||||| |||| |||||| ||| | | ||| Sbjct 77472 AAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTTCCCA 77416 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | || || | | || ||||| ||||| | ||||||||||| || ||| | || Sbjct 77415 ATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTT 77356 Query 33837 TTTATACAT 33845 ||| ||||| Sbjct 77355 TTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946148776600