Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq50 280 4e-70 seq61 190 5e-43 seq118 87.8 5e-12 >seq50 Length=135657 Score = 280 bits (310), Expect = 4e-70 Identities = 379/523 (72%), Gaps = 5/523 (1%) Strand=Plus/Plus Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||| | ||||||||| ||||| || |||||||| ||| | || ||||| || | Sbjct 77675 CAGTTAAAACTAAGGCAGAATGGGCAACAAAGTGGATGAATAATAATCGGTCATTTGCAG 77734 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCA 22548 || | | |||| ||| || |||||||| || || |||||||| ||| |||||||| Sbjct 77735 AAAGAGTAATTGGCTTTTGTGCAGTTGAAGGTATCTTGTTTTCTGGCAGC-TTTTGTGCT 77793 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||||| | | ||||| || |||| ||||| ||||| |||| Sbjct 77794 ATATTTTGGCTTAAGAAACGTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATA 77853 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 ||||||| ||| ||||| | || |||| ||| | || ||| || ||| | | | Sbjct 77854 TCTAGAGATGAAGGTATTCATGCGGACTTTGGATGTTTACTTTATA--AAACAT-TAAAT 77910 Query 22669 CATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 || ||||||| ||||| || | || ||||| || | || |||||| |||||||| Sbjct 77911 AATCGTCTTCCATGTGAAAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGT 77970 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 |||| | || || | ||||| ||| ||||||||| || ||| | || |||| Sbjct 77971 ACATTTTTATGTGATTCATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCC 78030 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTAT 22848 ||||||| |||||||||| |||||| || | || |||| | | | ||||| || Sbjct 78031 CAATATATTGAATTTGTTGCTGATCGTTTACTGTTTGCACTAGATGTTCCAAAGTTATAC 78090 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 || ||| ||||||||||| |||||||| ||||||||| | |||| || || || || Sbjct 78091 AATGTCACGAATCCATTTGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTT 78150 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 || || ||| |||| | ||||||||||| ||||| ||||||| Sbjct 78151 TTTGAGAAACGAGTAGCTGAATACCAAATGGCAGGAGTTATGG 78193 >seq61 Length=587635 Score = 190 bits (210), Expect = 5e-43 Identities = 615/943 (65%), Gaps = 10/943 (1%) Strand=Plus/Minus Query 363373 GATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTAT 363431 ||| | || ||||| |||||| | | |||||| | || | ||| || || || | Sbjct 494880 GATTTTGAATATGACTATTTT-GCTTTTAAGACTCTAGAAAGATCTTATTTACTGCGGGT 494822 Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 | ||| | | ||||| ||| | || || || | |||||| | || | ||||||||| Sbjct 494821 CGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAGTCTCCTGTGGTATCCA 494762 Query 363492 TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-A 363550 | || | ||||| || |||||||| ||| | || || | | ||||| | Sbjct 494761 CTATGGTAATATAGATGCAGCAATTGAAACTTATGAACTGCTCTCT-CAGAAGTATTTTA 494703 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | || || || || ||| | | ||||||||| |||| | ||||||||||| ||||| | Sbjct 494702 CTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCCCACAGATGTCCTCTTGTT 494643 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 || |||| |||||| || || || || || || || ||||| ||||| ||||| |||| Sbjct 494642 TTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTGATACACTAAAGAAATGTG 494583 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAG 363729 | ||| ||||| ||| || ||| | || || | | ||| | || || ||| Sbjct 494582 CAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTTTCTAATATACGAGCTGCAG 494523 Query 363730 AA-CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | || ||||| || || || || || ||||| | |||| ||||| ||||| Sbjct 494522 GATCA--TACATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGT 494465 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | | |||| || | || || ||||| ||||||||||| | || || || |||| Sbjct 494464 GTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGC 494405 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 | | ||| | || ||| ||||| ||| |||| || ||| | ||| | |||| ||| Sbjct 494404 TGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCA 494345 Query 363909 GGGAAAAGAGGAATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 || |||||||| || | ||| |||||| | || ||||| ||| | |||| | | Sbjct 494344 TGGTAAAGAGGAGATGAGATGC-CGTGATATATTTCCAGCACTATGGATACCTGATCTGT 494286 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 | ||| || | || ||| | | || ||| || | | || || | ||||| || | Sbjct 494285 TCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGCCCTG 494226 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 | | ||||| ||||||||| | | | | |||| ||| | |||||| || | Sbjct 494225 GGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAG 494166 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | | | | || |||||| ||||| | | |||||||| | | | || || | Sbjct 494165 GTCGCGGTAGGAAAACAATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAA 494106 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 |||||||||| || || | ||| | || || ||| | || || || ||| || | Sbjct 494105 TTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAAC 494046 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | | || ||||| || | ||||| |||||||| || ||||| || || || | Sbjct 494045 AAAATCTGGGTACGATAAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTT 493986 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | ||||| || || |||||| | || || || | ||| || Sbjct 493985 CAAACGAGGTCGCAGTTTGTAACTTGGCATCTATAGGGCTCCC 493943 >seq118 Length=74726 Score = 87.8 bits (96), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| ||| ||||||||||| ||||| ||||| |||| | | | | ||| | Sbjct 56877 TAAAATTTCCTCTGAAAATCCTGTTCCTATCTTACATATTGTCTCATAAATTTCACTATT 56818 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 ||||| ||| || || | || ||| ||||||| |||| | ||| || ||| Sbjct 56817 TGGATTATAAACTGCCAATAGAAATGTTCCATATATACCACACCTTTTACCTTTACCATG 56758 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | || || || |||| |||| |||||| || || ||| |||||| || || Sbjct 56757 AAATGCAGCTATAGGGACAACATCAATACTATCCATAATACCATCAATATAATCTTTCTT 56698 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGA 145771 | ||| |||||||| | |||||||| || |||||||| || | || || | || | Sbjct 56697 TATTTTAAGCCAATTTAAGGAACGTTTAGAAGGTTCATAACTTGCATTTTCATTTAAAGT 56638 Query 145772 TTTTACCATTAGCCCCTC 145789 || ||||||| ||||| Sbjct 56637 CTTAACCATTAATCCCTC 56620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351345605570