Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq61 338 8e-88 seq50 257 2e-63 >seq61 Length=587635 Score = 338 bits (374), Expect = 8e-88 Identities = 1219/1888 (65%), Gaps = 34/1888 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || ||| | ||| || || | || ||||| || ||||||| | Sbjct 493040 GTGAATTGTATAGGATTTGCAGCGCTTTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAA 493099 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||||||| || || |||||| | ||| || | ||| | | || ||| ||| Sbjct 493100 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGTTGGCATTTGCAATA 493159 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 | ||||| | ||| ||| |||| ||| | | ||| || ||||| ||||| | ||| Sbjct 493160 TAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAATA 493219 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62088 | | |||||| ||||||||| | ||||| || | |||| ||||||| || | Sbjct 493220 ACTGCTTTTTGTCTAATTTCCCAGACGGTTTTGTACAGGTCGCG-AATATCTCGCGGTAT 493278 Query 62089 G---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA-TCTCATCAT 62144 | |||| |||| |||| | || || || || | || | |||| |||| Sbjct 493279 AGACTCAATATTTTGAACACTTCCATTGTTAGCAATGATACTCTGTTTCAGTCTC-TCAT 493337 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 ||||| | || |||| | | | | ||| ||||| || || || || | Sbjct 493338 CCCATAGTCCCAATTCAAGTAAATCATTCAACAAATGAGGATTCACAACAAAGAACTCCC 493397 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 |||||||||| | || | || ||||| |||| | ||||| | |||||||| | Sbjct 493398 CAGACAATACACGCCTATGATATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCC 493457 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 | | | |||| || ||||| || ||||| || || ||||| || |||||||| | Sbjct 493458 CTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGC 493517 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC----GACGGTACA 62380 | || | ||||| || || || ||||| |||||||| ||| || ||| Sbjct 493518 CATACTTAGCTATTTTCTCCTTCAGTAAATCCCAGTTCCAAAG-TCCTGAGGAGGGTTGC 493576 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62440 || |||||| | ||| |||| || || ||| | |||| || Sbjct 493577 ACATTCCAGAGATCAAATTGTAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCA 493636 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 || || || | |||||| ||||| |||||||| || || | ||| | || || || || Sbjct 493637 TAGGGACCATACTTCTCTGCTAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTC 493696 Query 62501 TCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 || || |||| |||||| | | || || || ||| ||||||| | || | Sbjct 493697 TCAAATATCTCAACATTTAGTTTCCTG-GCATCTTTAGATTCATATGGATATCTCAATAT 493755 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 ||||| ||||| | ||||| || || | ||| | || ||||||||| |||||| Sbjct 493756 CATAAAACAATCTGCAAGACCTTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGA 493815 Query 62620 GATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678 | | || ||||||||||||||||| | ||| |||| || ||| ||||| || Sbjct 493816 CCTC-CTGCACTCTGGAATAGGATAATATCCACGATCAATAACTTCATTTAGATTCCTTG 493874 Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTAC 62733 ||| || || || || | || || |||||| ||| | || |||| | Sbjct 493875 TTGCTACCTTTACTACTTCATATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAA 493934 Query 62734 AAACATGTTCAATGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 || | | | | | |||||||| |||||||| || ||||| || | | | || Sbjct 493935 CAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAACTGCGACCTCGTTTGAACTAGTAT 493994 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | || || || || || ||||| ||| | || || || || | |||||||||||| | Sbjct 493995 ACTCCATAATTTCTGTACATAGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGC 494054 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 | || ||| ||||||||||| ||| ||||||||||| || ||||| || || | Sbjct 494055 TTTTACGATTAGCTGCATCCTTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT 494114 Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--TTTTCTCT 62970 || | || ||| | | | || || ||| | || || | | |||| | Sbjct 494115 GTAGCAATGCAAACCACAAACTTTGTGCTTTAATTGT--TTTCCTACCGCGACCTTCTTT 494172 Query 62971 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 ||| ||||||| ||| ||| || || | ||| ||||| |||| | || ||||| Sbjct 494173 TTC--ATAGTGTTCATATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGG 494230 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 |||||||| |||||||| || | ||| | | | || | || |||| | ||| || ||| Sbjct 494231 CATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGA 494290 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 ||||| ||||| || ||| ||||| ||| | | ||| ||||| || || ||| Sbjct 494291 TCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTC 494350 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 || | | || | || ||| || ||| | |||||| |||||||| || | || | Sbjct 494351 TTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGT 494410 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | || || ||| ||| || || || | || | || || | |||||| || | | Sbjct 494411 GCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGC 494470 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||||||||| | |||||| || ||||||| || || ||| || ||| || Sbjct 494471 AGCATTGGAATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCT 494530 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 || |||||| || | | |||| ||| || || | || || ||| ||| Sbjct 494531 CGTATATTAGAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTC 494590 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 |||| |||||| | ||||| || || ||||| ||| || || | |||||| Sbjct 494591 TTTAGTGTATCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAG 494650 Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 ||||| || | ||| ||| || ||||| ||||| || |||| ||| |||||||| | Sbjct 494651 GACATCTGTGGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATAC 494710 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCC 63567 || | ||| || || | || || ||||| |||| |||||| | |||| | || || || Sbjct 494711 TTCTGAGAGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACC 494769 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 | ||| | |||||| | ||| || || ||||| || ||||| | | | || Sbjct 494770 ACAGGAGACTCTCATTAATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAG 494829 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 || || ||| |||| | ||| |||||| ||||||||| ||| ||| || || | | Sbjct 494830 TAAATAAGATCTTTCTAGAGTCTTAAAAGCAAAATAGTCATATTCAAAATCACG-GCTAA 494888 Query 63688 AAT-AATAACCGAGTTGAGTTTATCCTT 63714 ||| |||||| ||||| | | |||| || Sbjct 494889 AATCAATAACTGAGTTTAATCTATCTTT 494916 >seq50 Length=135657 Score = 257 bits (284), Expect = 2e-63 Identities = 622/912 (68%), Gaps = 45/912 (5%) Strand=Plus/Minus Query 32315 TTAAAAGTCAACATCTAGA--GAAAAATGATTGTCTT-CT--TGAGACATAACTCCCATT 32369 |||||| ||| |||||||| ||||| | | ||||| || |||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATT--TGGTCTTTCTGATGAGCCATAACTCCTGCC 78180 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||||||||| | || ||||| || ||||| ||||||||||||| |||||| ||| Sbjct 78179 ATTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGA 78120 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| || ||||| || | ||| || | | | || | | Sbjct 78119 TCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGT 78060 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || | ||| || |||||||| |||||| ||| | | | ||||||| || || || Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 78000 Query 32550 TTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || || | || |||| ||| |||| |||||| || || |||| ||||| Sbjct 77999 TCTACAGGTAATGAATCACA-TAA-AAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 77942 Query 32608 TAGATCTT--ACTGTTTCTTCACTCGGTGGA--TACAATAAATG-TTTAAACATCAAACA 32662 | |||| ||| | ||||| || || | | |||| |||| | | ||||| Sbjct 77941 T--TTCTTGAACTCT---TTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACA 77887 Query 32663 TGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 32721 | | || | |||| || | ||| || |||||| |||| ||| || ||||| || | || Sbjct 77886 TCCAAAGTCCGCA-TGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 77828 Query 32722 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAA 32780 | ||||||| ||||| || |||||||||||||| | | |||| | | |||||||| || Sbjct 77827 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAG 77769 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCATGTA 32838 || ||||| ||||| |||| |||| | ||| ||| | || |||| | | || | Sbjct 77768 ATACCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTCA 77711 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC-ACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| ||||| || ||||| |||| || | | | ||| ||| || | | Sbjct 77710 TCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT-GATATTGCTTCA 77652 Query 32898 AAGAG---ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 || || | | | || |||| |||| | |||| |||||| ||||| ||| Sbjct 77651 AAAAGCATTTGGCGATCTT--TTAC-ATCTGATATATATTGATCAATTAAAAGGGAATAA 77595 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 |||| ||||| | || || || ||||||||||| || | |||||| || Sbjct 77594 GTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 77535 Query 33015 ATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 || || | || || || ||||| | | ||||| || || | || ||||| ||||| || Sbjct 77534 ATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 77476 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT---GTTAGTTTATT 33130 ||||||||| || || |||| ||| ||||||| |||| |||||| ||| | | Sbjct 77475 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT---TCTGGTTCCTTTAAACTTTC 77419 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||| | || || | | || ||| | ||||| | ||||||||||| || ||| | Sbjct 77418 CCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTC 77359 Query 33191 CTTTTTATACAT 33202 ||||| ||||| Sbjct 77358 TTTTTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630930746000