Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq73 143 2e-29 seq54 89.7 4e-13 >seq73 Length=203464 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||| || |||||| | || ||| | ||||| || | ||| Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | |||| ||| || |||||||||||||||||||| || Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAA-GATAAAGAAGGGATTCCACCTGATCA 180808 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| || |||||| | || |||| ||| ||| | ||||| || Sbjct 180807 ACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAA 180748 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| || || |||||||| || | ||||||| || Sbjct 180747 TATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 >seq54 Length=243407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 24980 ATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCAC 25039 ||||||| | || || ||||||||| ||||| || || || || || ||| | || || Sbjct 218372 ATTTGTA--AGACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTAC 218315 Query 25040 AGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGA 25099 | | ||||| || | ||||| || || || | ||| ||| || ||||| || Sbjct 218314 ATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGA 218255 Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 || || || || || ||||| || | || ||||| || || ||| | ||||||| | Sbjct 218254 GGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAG 218195 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | || ||||||||||| || || || || |||||||||| | ||| || | Sbjct 218194 AACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACG 218135 Query 25220 AGGAGG 25225 || || Sbjct 218134 TGGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327287040025