Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq71 93.3 4e-14 >seq71 Length=86954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 140537 TTTACATTGTTCTACGTGATTCATATAGATATGAGTATTACCACCGGAAAATATCAAATC 140596 |||| |||| || || ||||| ||| ||||||| || |||| || ||| || || Sbjct 85974 TTTA-ATTGCTCAACATGATTTTCATAAATATGAGCATCACCAATAAAATGTATAAATTC 85916 Query 140597 TCCCGGAATAAGATT-ACACATCTTAGCTACAATATGAACTAACGTAGCATATGATGCAA 140655 ||| || | | || ||| || | ||| | ||| | ||| | ||| ||||||| Sbjct 85915 TCCAGGT-TCATATCCACATATATGAGCAATCATAACACATAATAATGAATAAGATGCAA 85857 Query 140656 TGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACTG------TAAAT 140709 | || ||||| | || || | ||| |||||||||||| | || | ||| Sbjct 85856 TATTAAATGGACATCCTAAACCTAAATCACAACTTCTTTGATATAA-TGAGCAACTTAAT 85798 Query 140710 CCAAATAGCCATTACGCACATTAAATTGATAGAACATATGACAAGGCGGTAATGCCATAT 140769 | | || |||| |||| ||||||| | || ||||||||||| ||||||||||||| Sbjct 85797 CTAT-TATT-ATTATCAACATAAAATTGAGATAATATATGACAAGGTGGTAATGCCATAT 85740 Query 140770 ATTTAAGTTCAGCTGGATTCCACGCAGAAACAATTTGTCGCCTATCAT 140817 |||| | | ||| ||||||||| ||||| | || |||| ||||||| Sbjct 85739 ATTTCATTGCAGATGGATTCCATGCAGATAAGATATGTCTTCTATCAT 85692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530719104410000