Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq73 96.9 3e-15 seq54 87.8 2e-12 >seq73 Length=203464 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 |||| ||||| |||||||| || || | || || ||||| || || | ||| ||| Sbjct 180932 TTAATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAA 180873 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || ||| || ||| | ||||| |||||| || |||||||| |||| Sbjct 180872 CCATCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCT 180813 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||||||||| | |||| ||| || |||||| | || ||| | ||| | | ||| Sbjct 180812 GATCAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGAT 180753 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| || || ||||| || || |||||||| || ||| | | ||||| Sbjct 180752 TATAATATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 >seq54 Length=243407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 111169 ATTTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACC 111228 |||| ||||| || || ||||||||||||||| ||||| | || || ||||| ||||| Sbjct 218372 ATTTGTAAGACTT-AAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACA 218314 Query 111229 GTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAA 111288 | ||| ||||| ||| | ||| | ||||| ||| || ||||| || Sbjct 218313 TTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAG 218254 Query 111289 GGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAA 111348 || | || ||||||||| | | || | ||| || || ||| | |||||| | | Sbjct 218253 GGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGA 218194 Query 111349 ACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGC 111408 ||| | | || || ||||| || || || ||||| |||||||||| ||| | | || Sbjct 218193 ACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGT 218134 Query 111409 GGTGG 111413 ||||| Sbjct 218133 GGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039303967000