Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq54 113 3e-20 seq73 105 5e-18 >seq54 Length=243407 Score = 113 bits (124), Expect = 3e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 21811 ATATTTATAAGTAATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCA 21870 |||||||| |||| | | | ||||||||| ||| ||||||| ||||| || ||||| | Sbjct 218378 ATATTTATTTGTAAGACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTA 218319 Query 21871 TTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATA 21930 |||| | ||| ||| | | || || | | || | ||| ||| || || | Sbjct 218318 TTACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACA 218259 Query 21931 AAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATT 21990 | ||||| ||||| | | ||||| | | ||||||||||| || ||||| |||||| Sbjct 218258 AGGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATG 218199 Query 21991 TAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTT 22050 | |||| | | || ||||||||||||||||| |||||| | ||| | || || | | Sbjct 218198 GCAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGT 218139 Query 22051 TACGAGGAGG 22060 |||| || || Sbjct 218138 TACGTGGTGG 218129 >seq73 Length=203464 Score = 105 bits (116), Expect = 5e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||||||| ||||| || || | ||| ||| | | Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| |||||| |||||||| || | ||||| | Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTG---AT 180810 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||||| || ||| ||| | | ||||| Sbjct 180809 CAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTAT 180750 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| ||||||||| | || ||||||||| |||| || Sbjct 180749 AATATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124210772790