Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq61 201 1e-46 >seq61 Length=587635 Score = 201 bits (222), Expect = 1e-46 Identities = 916/1431 (64%), Gaps = 26/1431 (2%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| |||||| || ||||| | ||||||||||| || || | ||| | ||||| Sbjct 494508 GGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGTGTATAATGATACAGCA 494449 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || ||||| |||||| ||| | | ||||| | | || |||||| | || || Sbjct 494448 CGTTATGTTGACCAAGGTGGAGGAAAAAGGAAGGGTGCACTTGCTGTCTATTTGGAACCT 494389 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| |||||| | |||| || | ||| | | ||||| ||| | |||||| | Sbjct 494388 TGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCATGGTAAAGAGGAGATG 494329 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||||| ||| | || | || || ||||| || ||||| |||||| ||||||| ||| Sbjct 494328 AGATGCCGTGATATATTTCCAGCACTATGGATACCTGATCTGTTCATGGAGAGAGTAGAG 494269 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGT 112198 || || || ||| | | | ||||| || || || || || | |||| | Sbjct 494268 AAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGC-CCTGGGATGCAAGATGTCTG 494210 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC 112258 |||||| | ||| ||| | || | | || || ||||| |||| | | || Sbjct 494209 GGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAGGTCGCGGTAGGAAAAC 494150 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | ||| | ||||| || | || |||| |||| ||||| ||||| || Sbjct 494149 AATTAAAGCACAAAGTTTGTGGTTTGCATTGCTACAGTCACAAATTGAGACAGGTACTCC 494090 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||| || || || || ||| | || || |||||| | ||| ||||| ||| Sbjct 494089 ATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAACAAAATCTGGGTACGAT 494030 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC-AGACAAAGATGAGACGGCTG 112437 || | ||| || ||||||||||| |||| | ||| || || | ||| || | Sbjct 494029 AAAATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTTCAA-ACGAGGTCGCAG 493971 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | |||||| | ||||| || | ||||| | ||| ||| || | |||| ||| | Sbjct 493970 TTTGTAACTTGGCATCTATAGGGCTCCCTCGTTTTGTTGATAGGGATAATAAGAAATTCG 493911 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA-CAAAAAACCTAAACAGAGTTATT 112556 ||| | |||| || | ||||| | ||| | || ||| || ||||| ||||||| Sbjct 493910 ATTTTAAAAAGCTATATGAAGT-AGTAAAGGTAGCAACAAGGAATCTAAATGAAGTTATT 493852 Query 112557 GATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 ||| | | ||| || || ||| ||| | | |||||| ||||||| | ||| | Sbjct 493851 GATCGTGGATATTATCCTATTCCAGAGTGCAGG-AGGTCTAATCTGAGACATAGGCCACT 493793 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 |||| | || || |||||||| || ||| || || | | | | ||| ||| || Sbjct 493792 TGGTTTAGGAGTACAAGGTCTTGCAGATTGTTTTATGATATTGAGATATCCATATGAATC 493733 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | || || | | || | |||| |||||||||||||| || | || |||||||| Sbjct 493732 TAAAGATGCCAGGAAACTAAATGTTGAGATATTTGAGACAATATACTATGCTGCTCTTGA 493673 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 || |||| ||| | |||||| ||||||| |||||||| ||| | ||||| ||||| Sbjct 493672 TGCAAGTTGTGAGCTAGCAGAGAAGTATGGTCCCTATGAAACATTTCAAGGTTCACCAGC 493613 Query 112796 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACG-- 112851 | ||| |||| ||||||||| | | |||| ||| ||| || ||| | Sbjct 493612 TAGTAGAGGTCTGCTACAATTTGATCTCT-GGAATGTGCAACCCTCCTCAGGACTTTGGA 493554 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 ||||||| || ||||| || || | || ||| | ||| | ||| | | Sbjct 493553 ACTGGGATTTACTGAAGGAGAAAATAGCTAAGTATGGCCTTAGAAACTCGTTGTTGGTAG 493494 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | |||||||| || || || || | || | | || ||||||||| |||||||||| | Sbjct 493493 CTCCAATGCCTACCGCATCTACATCTCAGTTACTAGGGAATAATGAAAGCTTTGAACCAT 493434 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 || | || || |||| || | | | || ||||| | |||| || | Sbjct 493433 TTACCTCAAATATATATCATAGGCGTGTATTGTCTGGGGAGTTCTTTGTTGTGAATCCTC 493374 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA---AGGATCTCA 113088 || | || |||| | || | || || ||| || ||| || | ||| Sbjct 493373 ATTTGTTGAATGATTTACTTGAATTGGGACTATGGGATGAGAGACTGAAACAGAGTATCA 493314 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | | || || || |||||||||||| | ||| || || ||| | Sbjct 493313 TTGCTAACAATGGAAGT---GTTCAAAATATTGAGTCTATACCGCGAGATATTCGCGACC 493257 Query 113149 TGTACCGCACAGTTTGGGAAATCA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 ||||| || || |||||||| | | | ||| | || ||||| ||||| |||||| | Sbjct 493256 TGTACAAAACCGTCTGGGAAATTAGACAAAAAGCA-GTTATTGATATGGCGGCAGATAGA 493198 Query 113208 GGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTAT-TCATGGAAAGTCCAACGATGTC 113266 || | | |||| |||| ||| | | ||| | | | || ||| ||||| ||| | Sbjct 493197 GGACCATACATTTGTCAATCTCAGTCTCTAAATATTTATATTGCAAATGCCAACTATG-C 493139 Query 113267 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317 ||||| |||||||||||| | || | |||||||||||| | ||||| || Sbjct 493138 AAAGCTATCTTCTATGCACTTCTATGGATGGAAGAAGGGTTTAAAAACTGG 493088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741352497200