Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq61 118 1e-21 >seq61 Length=587635 Score = 118 bits (130), Expect = 1e-21 Identities = 689/1088 (63%), Gaps = 24/1088 (2%) Strand=Plus/Plus Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 |||||||||| ||||||||| || | | || | || || || || |||||||| || Sbjct 493436 GGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAGGCATTGGAGCT 493495 Query 106013 ATCAAAAGACTGTTACGAAGACCCT--TTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 | ||| | ||| | ||| || | || || | | ||||| || | |||||||| Sbjct 493496 ACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTC--TCCTTCAGTAAATCCCAGT 493553 Query 106071 --CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGAC 106126 | ||| |||| |||| ||| |||| | | ||||||||| |||| ||| Sbjct 493554 TCCAAAGTCCTGAGGAGGGTTGCACATTCC-AGAGATCAAATTGTAGCAGACCTCTACTA 493612 Query 106127 GTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 106186 | || ||||| | |||||| ||||||| ||| | || || | ||||| || || Sbjct 493613 GCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCACAACTTGCA 493672 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 || || | || | || || || ||||| || | |||| | | | |||| || | Sbjct 493673 TCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTGGCATCTTTA 493732 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || ||| ||| || | | | ||||| ||| || |||||||| || || |||||| Sbjct 493733 GATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACTCCTAAACCA 493792 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTC 106365 | || || |||| || ||||||| | | ||| ||| || |||||| | | || Sbjct 493793 AGTGGCCTATGTCTCAGATTAGACCTCCT-GCACTCTGGAATAGGATAATATCCACGATC 493851 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| ||| |||||||| | || | | |||| | ||||| || |||| | |||| Sbjct 493852 AATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTTTTTAAAATC 493911 Query 106426 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 || | | | || || ||| | || || | || |||||||| || ||||| Sbjct 493912 GAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAAGTTACAAAC 493971 Query 106486 AGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAA 106544 || ||| | | | || || ||||| | |||||||||||| | ||| | || | Sbjct 493972 TGCGACCTCGTT-TGAACTAGTATACTCCATAATTTCTGTACATAGATTGCTAGATTTTA 494030 Query 106545 TCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGG 106604 |||| |||| ||| | ||| || || || || |||||||| ||| || | | Sbjct 494031 TCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCAAATAAATG 494090 Query 106605 GCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAA 106664 | || || ||||| | ||||||| || | ||| ||||| | | | || | || Sbjct 494091 GAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACA-AACTTTG--TGCTTTAA 494147 Query 106665 TGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | | | | | || || || || || | | || | ||| ||| | |||| Sbjct 494148 TTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAATTGGTCAC 494207 Query 106722 CCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || | || | || || || || || ||||| | | | ||| | || || Sbjct 494208 CCCAGACATCTTGCATCCCAGG-GCATTCATCAGGACACATTAATGTCCAGTTTGCATCC 494266 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 106840 | ||| || | || |||||| || || || ||||| || | || ||| | ||| | || Sbjct 494267 TTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATCACGGCAT 494326 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 106900 | ||| || | ||| ||||| | || ||| | || |||| | |||||| ||| Sbjct 494327 CTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGC 494386 Query 106901 CATGGCTCAAGATAGACTGCGATAGATCCCT---TTCGACGCCCAGCTTGATTTACATAG 106957 || || || | |||||| || | | |||| || | ||| |||| | ||||| Sbjct 494387 CAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAA 494446 Query 106958 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 107017 || ||||| | ||| | || || ||||||||||| | ||||| || |||||| || Sbjct 494447 CGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTA 494506 Query 107018 CCCCGAAT 107025 || || || Sbjct 494507 CCACGGAT 494514 Score = 105 bits (116), Expect = 8e-18 Identities = 318/487 (65%), Gaps = 8/487 (2%) Strand=Plus/Plus Query 168227 TAAGGCTCTTTGAATATTCTCCTTGATATCCTTTGGATTGAATGGTGGTACATAGCAACT 168286 ||||||||||| | ||| | ||||||| || || || | ||| ||| | ||||| Sbjct 100296 TAAGGCTCTTTTCAGATTATTAATGATATCTTTAGGGTTATAGTTTGGAACAGAACAACT 100355 Query 168287 GAATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTA 168346 |||| ||||| ||||| || | || || || | |||||||| ||| |||| | || Sbjct 100356 CCATCCAGTACCAATACCATCAGCACCGTTAACTAAGACCATTGGAATGATTGGTACATA 100415 Query 168347 AAAGTCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCG 168406 || ||||||||| | |||||||| | || || | | | || ||||| Sbjct 100416 GAATAAAGGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATC--- 100472 Query 168407 AGGATCA---AAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCT 168462 || || || || | |||| || | | ||| |||||| || ||||| | | Sbjct 100473 AGCTTCTGGGAAAATATAACGAGTCCAAGTAGATAA-TTTTGTAAATATGTAACGGGCAG 100531 Query 168463 GAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGT 168522 | |||||||| ||||| | |||||||||||||||| || | ||| | || Sbjct 100532 CACTTGCATCCTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGT 100591 Query 168523 TAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATA 168582 | | ||||| || | || | |||| || |||||||| | ||| || Sbjct 100592 TCAAATTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAG 100651 Query 168583 CTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCA 168642 |||||||||| ||||| ||| | || || ||||| | || | |||||| || |||| Sbjct 100652 CTTCACCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCA 100711 Query 168643 TTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGA 168702 |||||| || || ||||| | || || ||| | |||||||| ||| |||||| | Sbjct 100712 TTTCATTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCTTTGTCCAGGCTTTA 100771 Query 168703 GACCATC 168709 ||||| Sbjct 100772 ATCCATC 100778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979804407400