Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq54 147 5e-30 seq73 122 2e-22 >seq54 Length=243407 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||||||| | || | ||| ||||| || ||||||||||| || | | |||||| ||| Sbjct 218141 CTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCA 218200 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| || ||||| || || ||||| | |||||||| |||||||| || || || ||| Sbjct 218201 TCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTG 218260 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||| || ||| ||| || || ||||| || || ||| ||| ||||| | |||| Sbjct 218261 TCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATA 218320 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || || ||||| || || | ||||||| Sbjct 218321 GTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 218356 >seq73 Length=203464 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | |||||||| || || || |||||||| ||||| | | ||| | ||||| Sbjct 180715 AAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGATAAAGTCCGACCATCC 180774 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || || || || || || || || | || |||||| || || ||||| |||||||| ||| Sbjct 180775 TCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGAATCCCTTCTTTATCT 180834 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || || ||||| || || || ||| |||||||| || | || Sbjct 180835 TGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACTTCAAGTGTTATTGTT 180894 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| || || || | ||||| Sbjct 180895 TTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479680943545