Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq61 338 7e-88 seq50 297 2e-75 >seq61 Length=587635 Score = 338 bits (374), Expect = 7e-88 Identities = 1175/1835 (64%), Gaps = 52/1835 (3%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||| || || |||||| |||||||| ||||||||||||| ||||| Sbjct 493066 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 493125 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 | || || || | ||| | | | || ||||| |||||| ||||| ||| ||| Sbjct 493126 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 493185 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 ||| ||| |||||||| || |||||||| | || | ||||| || ||||| || Sbjct 493186 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 493245 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCC 47245 ||||| || | | ||| ||| || | | | | ||||||||| | ||| Sbjct 493246 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 493305 Query 47246 gttttctataattttgttttttaat---tcatttgaccaaagttttcgttcagttaatgt 47302 ||| | || || | | ||| | | |||| ||| ||| |||| ||| Sbjct 493306 GTTAGCAATGATACTCTGTTTCAGTCTCTCATC---CCATAGTCCCAATTCAAGTAAATC 493362 Query 47303 ttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTAT---A 47359 || || | ||||||||| |||| || || ||||| | ||| ||| |||| | Sbjct 493363 ATTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATAC---ACGCCTATGATA 493419 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 |||||| ||| ||||||| | ||||||||| || | | |||| || ||||| Sbjct 493420 TATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGC 493479 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 |||||||| | || || || || ||||| | ||||| || ||| | Sbjct 493480 GGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTT 493539 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATG---GAACAACATTCCAAAAATCATATTGAAG 47536 | ||| | |||||| |||| | | |||||||| | |||| |||| || Sbjct 493540 CAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAG 493599 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 | ||| |||| || ||||| | | |||||| ||| ||||| || | || || Sbjct 493600 CAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAG 493659 Query 47597 TTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATT 47656 ||||||||||| || | ||| ||| |||||||| |||||||| | | ||||| || Sbjct 493660 CTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTT 493719 Query 47657 CCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 ||| || ||| |||||| | ||||| || |||||| | ||||| Sbjct 493720 CCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTG 493779 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC-TTCTGGTAATGGAT 47775 || || | ||||| ||| ||||| | |||||| | | || ||||| | |||| Sbjct 493780 TACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGAT 493838 Query 47776 ATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTA 47835 | | ||| |||| || ||||||| || | ||| || Sbjct 493839 AATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATA 493898 Query 47836 ATTTATTAAAATCAAACTTGTTATT-----TAT-AACAAACCTATTAAGTGCTATAGATG 47889 || |||||||| || || ||||| ||| |||||| | | || ||||||||| Sbjct 493899 GCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATG 493958 Query 47890 CTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGAT 47949 | | ||||| || || ||||| |||| | ||||||| | || ||||| | |||||||| Sbjct 493959 CCAAGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGAT 494018 Query 47950 TACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGT 48009 | | | |||| || ||||||| |||||| ||||| | ||| ||| ||||| | Sbjct 494019 TGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTAT 494078 Query 48010 AAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCC 48069 | ||||| || || || || || || || || | ||| | ||||| | Sbjct 494079 AGCAAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAAC---CA 494130 Query 48070 TAGCCTTTATAACAGCTCTA---GCTTTATTATC---ATGTTCGTATT--TAGT----AT 48117 | |||| | ||| || | ||| || | | ||| | || |||| || Sbjct 494131 CAAACTTTGT----GCTTTAATTGTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCAT 494186 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 |||| | | ||||| || || | |||| | | |||||| ||||||| |||||||| Sbjct 494187 ATAATTCTTTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACA 494246 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | |||| ||| | |||| || | |||||| ||| || | ||| |||||||| || | Sbjct 494247 TTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTG 494306 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || ||||| ||| | ||| | || || || ||| ||| | | | || | || Sbjct 494307 CTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAA 494366 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | |||| | ||| |||||||| ||||| ||||| | || | | |||| | ||| Sbjct 494367 ATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTC 494426 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 || ||||| || | ||| | || |||| ||||| || | | |||||| | | || Sbjct 494427 CTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAAC 494486 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 |||| || ||||||| || || || || ||| ||||| ||||||| || | Sbjct 494487 CATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAG 494546 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | |||| ||||| || | || ||| ||||| || || |||||| ||| Sbjct 494547 CCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTAGTGTATCAAAAA 494606 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | || || || |||||| ||| || | | ||||||| ||||| || || || Sbjct 494607 TGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAA 494666 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 ||| || | ||| |||||||| |||| |||||| |||| | |||| || | || || Sbjct 494667 GAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTT 494726 Query 48658 TATATGTTTCAATAACAGAATCTATA-TCCCATTGATGTATACCTATAGATACACGCATT 48716 ||| |||||||| | | ||||||| | |||| | || ||||| || || | |||| Sbjct 494727 CATAAGTTTCAATTGCTGCATCTATATTACCATAG-TGGATACCACAGGAGACTCTCATT 494785 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 || | | ||| || ||||| ||||| || | || | || | ||| ||| |||| Sbjct 494786 AATAGGTGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCT 494845 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || |||||| ||||||||| ||| ||| || Sbjct 494846 AGAGTCTTAAAAGCAAAATAGTCATATTCAAAATC 494880 >seq50 Length=135657 Score = 297 bits (328), Expect = 2e-75 Identities = 585/845 (69%), Gaps = 23/845 (3%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| ||||| || |||| ||| ||||| || |||||||| || | |||||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| ||||||||||||| | ||||| |||| ||| | ||| | | || |||| Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 78059 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATC-ACAATTCATTCCTATTAAT 18849 | ||| || ||||||| ||||||| | ||| | ||| | ||||||| || || | Sbjct 78058 AACGATCAGCAACAAATTCAATATATTGGGCCATTA-ATCTAGAATTCATCCCAATGAGA 78000 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||||||| || ||| | |||| |||| | | || || |||| |||||| Sbjct 77999 TCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATT 77940 Query 18910 GATACAACTCTATCTTCATT--AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | |||||| || ||| || | ||| || | |||| | | |||||| ||| Sbjct 77939 TCTTGAACTCTTTCA-CATGGAAGACGATTATTTAATGT-TTTATAAAGTAAACATCCAA 77882 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || ||| | || || |||||| ||| | |||||||||||||||||| ||||||| Sbjct 77881 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 77822 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | | ||| | ||| || | ||| ||||||| | |||| | | |||||||| || |||||| Sbjct 77821 TTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACCT 77763 Query 19087 TCTACTGCTGCAAAAG-CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 || ||||| |||||| ||| || ||||||| || || | | |||||||| ||||| Sbjct 77762 TCAACTGC-ACAAAAGCCAATTACTCTTTCTGCA-AATGACC--GATTATTATTCATCCA 77707 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG-CATTGTCTCTATAGAATTAAATA 19204 || |||||| || ||||| |||| || ||| | ||| ||| | | ||| | Sbjct 77706 CTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGT-GATATTGCTTCAAAAA 77648 Query 19205 GATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | ||| || || | | |||| | |||| ||| || || | || ||| Sbjct 77647 G---CATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTT 77591 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | ||||| | || ||||| || |||||||| ||| | ||| |||||| ||| | Sbjct 77590 CACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTT 77531 Query 19322 GTA-CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | | || | || ||||| || | | || || || | || |||||||||||||||||| Sbjct 77530 GAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCA 77472 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||||||||| |||| |||||||||||||||||| | |||| | | |||||| Sbjct 77471 AAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCAATCT 77412 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | || || | | |||||||| ||||| | |||||||| || || ||| ||||||| Sbjct 77411 CTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTG 77352 Query 19501 TACAT 19505 ||||| Sbjct 77351 TACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107851441400