Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq61 161 5e-35 >seq61 Length=587635 Score = 161 bits (178), Expect = 5e-35 Identities = 347/517 (67%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | ||| ||| | |||| | ||| ||| ||||||| || | ||| || ||| Sbjct 494240 GGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATC 494299 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | ||| ||||| ||| | |||||| || ||||| || || ||||| ||| Sbjct 494300 CATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATC 494359 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 |||| || || |||| ||| | ||||| ||||| ||||||| ||||| ||| || Sbjct 494360 TCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTC 494419 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 ||||||||||||||||| || || || | ||| || ||||| | || || ||||||| Sbjct 494420 CTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGA 494479 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 | ||| ||| | || || || || | | | || | ||||||| | || |||| Sbjct 494480 ATTAAACCATTAGACCTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTA 494539 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTA 26251 | || | || | ||||||||| || ||| |||||| | | |||| Sbjct 494540 GAAACAGCCACCCCTAATCCACCAGCAGTCTTGCTTATATTTGCACATTTCTTTAGTGTA 494599 Query 26252 TCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGC 26311 || ||||| || | || ||| || |||| | | ||||||||| || | || Sbjct 494600 TCAAAAATGCCATCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGT 494659 Query 26312 GAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTC 26371 | || || || | ||| ||||||||||| |||||||||||| |||| |||| Sbjct 494660 GGGCGAAGAGTACCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATA--CTTCTGAG 494717 Query 26372 AAAGCTGT--ATAAGTTTCAAGAACTTCATCGATATT 26406 | ||| || ||||||||||| || |||| ||||| Sbjct 494718 AGAGCAGTTCATAAGTTTCAATTGCTGCATCTATATT 494754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039583670125