Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq61 138 1e-27 >seq61 Length=587635 Score = 138 bits (152), Expect = 1e-27 Identities = 705/1105 (64%), Gaps = 22/1105 (2%) Strand=Plus/Minus Query 75497 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 75556 || || || || |||||| || ||||| | ||||||||||| || || | ||| | Sbjct 494514 ATCCGTGGTACTAATGGTAGGTCTAATGGTTTAATTCCAATGCTGCGTGTGTATAATGAT 494455 Query 75557 ACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGG---GGTCCA-TCGCGGTCTACTT 75612 ||||| || ||||| | |||| | || | |||| ||| || | || ||||| || Sbjct 494454 ACAGCACGTTATGTTGACCAAG-GTGGAGGAAAAAGGAAGGGTGCACTTGCTGTCTATTT 494396 Query 75613 GGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGA 75672 |||||| |||||||| ||| | |||| || | ||| || | ||||| ||| | || Sbjct 494395 GGAACCTTGGCATGCGGATGTTTTGGAATTTATAGAGATAAGGAAGAACCATGGTAAAGA 494336 Query 75673 AGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 ||| | || | ||| | ||| || | || ||||| || || || |||||| || | Sbjct 494335 GGAGATGAGATGCCGTGATATATTTCCAGCACTATGGATACCTGATCTGTTCATGGAGAG 494276 Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCG 75791 || ||| ||| || | ||| | | | ||||| || || || || || | | Sbjct 494275 AGTAGAGAAGGATGCAAACTGGACATTAATGTGTCCTGATGAATGC-CCTGGGATGCAAG 494217 Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851 | | |||||| | ||| ||| | || | | |||||| | || ||| | | | Sbjct 494216 ATGTCTGGGGTGACCAATTTAAAGAATTATATGAACACTATGAAAAAGAAGGTCGCGGTA 494157 Query 75852 ATGCGACTGTACCAGCCGCCGATGTTTG--GAAGGCTATTCTCAAATCACAGACGGAGAC 75909 || | ||| | | ||||| | || | || | ||||| | ||||| Sbjct 494156 GGAAAACAATTAAAGCA--CAAAGTTTGTGGTTTGCATTGCTACAGTCACAAATTGAGAC 494099 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || || |||| ||| || |||||||| ||| || || || ||| | ||| | Sbjct 494098 AGGTACTCCATTTATTTGCTATAAGGATGCAGCTAATCGTAAAAGCAATCAACAAAATCT 494039 Query 75970 GGGAACAATCAAGAGCTCA-AATCTTTGCACGGAAATTTTAGAGTACAC-AGATAAGGAT 76027 ||| || || || | || ||||| || || |||||| | ||||| || || | | | Sbjct 494038 GGGTACGATAAA-ATCTAGCAATCTATGTACAGAAATTATGGAGTATACTAGTTCAA-AC 493981 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACT 76087 ||| || ||||| || |||||||| || | || || | ||| || || | | Sbjct 493980 GAGGTCGCAGTTTGTAACTTGGCATCTATAGGGCTCCCTCGTTTTGTTGATAGGGATAAT 493921 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | || |||| | |||| || ||||| | |||| | | || | |||||||| Sbjct 493920 AAGAAATTCGATTTTAAAAAGCTATATGAAGTAGTAAAGGTAGCAACAAGGAATCTAAAT 493861 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACA 76206 ||| ||||| | | |||||| || ||| ||| || ||||||| || |||| Sbjct 493860 GAAGTTATTGATCGTGGATATTATCCTATTCCAGAGTGCAGGAG-GTCTAATCTGAGACA 493802 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 || || ||||||| || || |||||||| || ||| ||||| | | | || | Sbjct 493801 TAGGCCACTTGGTTTAGGAGTACAAGGTCTTGCAGATTGTTTTATGATATTGAGATATCC 493742 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 || ||| || | || |||| | | | |||| | || ||||| || || || | || Sbjct 493741 ATATGAATCTAAAGATGCCAGGAAACTAAATGTTGAGATATTTGAGACAATATACTATGC 493682 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 | || || || |||||||| | || || | ||| ||||||| |||||| | || Sbjct 493681 TGCTCTTGATGCAAGTTGTGAGCTAGCAGAGAAGTATGGTCCCTATGAAACATTTCAAGG 493622 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA- 76445 ||| || || ||| |||| || |||||| | ||| || ||| |||| |||| Sbjct 493621 TTCACCAGCTAGTAGAGGTCTGCTACAATTTGATCTCTGG-AATGTGCAACCCTCCTCAG 493563 Query 76446 -ACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 ||| | |||||||| | || ||||| || || | || ||| | ||| Sbjct 493562 GACTTTGGAACTGGGATTTACTGAAGGAGAAAATAGCTAAGTATGGCCTTAGAAACTCGT 493503 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562 | ||| | || |||||||| || || || || | || | | || ||||||||| ||| Sbjct 493502 TGTTGGTAGCTCCAATGCCTACCGCATCTACATCTCAGTTACTAGGGAATAATGAAAGCT 493443 Query 76563 TTGAACCATACACAACAAACATCTA 76587 ||||||||| || |||| || || Sbjct 493442 TTGAACCATTTACCTCAAATATATA 493418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 314/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 ||||| | |||||| ||| |||||||| | ||| || || | ||||| || || Sbjct 100778 GATGGATTAAAGCCTGGACAAAGGAAAGTTTTATATTCTGTGTTTAAAAAGAAGCTGAAT 100719 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 |||||||||| || |||||| | || | ||||| || || | ||| ||||| ||| Sbjct 100718 AATGAAATGAAAGTAGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCATACCATCAT 100659 Query 14483 GGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAAC 14542 ||||||| || ||| | |||||||| || |||| | || | || ||| Sbjct 100658 GGTGAAGCTTCTTTACAGAGTACGATTGTAAATATGGCGCAAGATTTTGTTGGAAGTAAC 100599 Query 14543 AACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602 || | ||| | ||| | || |||||||||||||||| | ||||| |||||| Sbjct 100598 AATTTGAACTTACTTCAGCCATGTGGTCAATTTGGTAGCAGGAAAGAAGGTGGCAAGGAT 100539 Query 14603 GCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATCTT--- 14658 || | | | ||||| || |||||| ||| | | || |||| | || || Sbjct 100538 GCAAGTGCTGCCCGTTACATATTTACAAAA-TTATCTACTTGGACTCGTTATATTTTCCC 100480 Query 14659 TGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACC 14718 || || ||||| || | | | || || | |||||||| | |||||||| Sbjct 100479 AGAAGCT---GATGATCCATTGTTAATATATCTGCAAGATGATGGTCAACAAATTGAACC 100423 Query 14719 AGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTAC 14778 || || | |||| | |||||||| | || || || | || ||||| ||||| Sbjct 100422 TTTATTCTATGTACCAATCATTCCAATGGTCTTAGTTAACGGTGCTGATGGTATTGGTAC 100363 Query 14779 GGGTTTCAGTTGCTATGTACCACCATTCAACCCCAAGGATATCAAGGAGAATATTCAAAG 14838 || | ||||| | ||| ||| | ||||| || ||||||| | ||| | |||| Sbjct 100362 TGGATGGAGTTGTTCTGTTCCAAACTATAACCCTAAAGATATCATTAATAATCTGAAAAG 100303 Query 14839 AGCCTT 14844 |||||| Sbjct 100302 AGCCTT 100297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568593288800