Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq50 190 3e-43 seq54 179 5e-40 seq73 150 3e-31 >seq50 Length=135657 Score = 190 bits (210), Expect = 3e-43 Identities = 567/851 (67%), Gaps = 30/851 (4%) Strand=Plus/Minus Query 17865 TTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 ||| |||||| | ||| |||||| || || || || || |||| ||||| || | || Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAAT 17983 ||| ||||||||||||| ||| || || || ||| || || | | | | | Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTA-TAACTTTGGAACATCTAGTGCAAACAGT 78060 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG- 18042 || | ||| || |||||||| | |||||| | ||| || ||||||| || | || Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 78000 Query 18043 TCTGAAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 ||| | ||||| | |||| |||| || | | || | ||||||| ||| ||| | Sbjct 77999 TCT-ACAGGTAATGAATCACATAAAAATGTACGT-TCAACTTCAACAGCTTCTGCTATAA 77942 Query 18102 TGTTTATTACCCTAGATTTTGGCAATTTATTAATTA-TGTGATTATAATATAATAAACAC 18160 | | | || || ||| | |||| ||| ||| |||||| | |||||| Sbjct 77941 TTTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTT-TTATAA---AGTAAACAT 77886 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 |||| || | || | |||||||||||| ||||||| ||| ||| ||| ||||| || Sbjct 77885 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 77826 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| || | ||| || ||||||||||| | || || | |||||| || ||| Sbjct 77825 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATA 77766 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA--ACTGTATTTATTGCTCAGT 18337 || ||||| |||| || | |||| |||||| ||||| || | ||||| || Sbjct 77765 CCTTCAACTGCAC-AAAAGCCAATTACTCTTTCTGCAAATGACCG--ATTATTATTC--- 77712 Query 18338 ATCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| ||| |||||||||| |||| | | |||| | ||| || | Sbjct 77711 ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGC-TGGTAAATGTGATATTGCTTC 77653 Query 18397 AAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || ||| ||| | ||||| |||| |||||| || ||||| | ||||| Sbjct 77652 AA--AAAGCATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAA 77595 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| || || |||||||| || ||||| | |||| || |||||| || Sbjct 77594 GTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 77535 Query 18515 TATTGAATCTCGCTATAAAATCTTT-CTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||||||| || ||||| ||| | | || ||||| | || || || ||| || Sbjct 77534 ATTTGAATCTC-CTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 77476 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||| |||||||| || ||||||||||| ||||||||||| ||||| | | | | ||| Sbjct 77475 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCA 77416 Query 18634 TTCATCT-ATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || ||| || || | || ||| | ||||| | |||||||| || | ||| | | Sbjct 77415 ATC-TCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 77357 Query 18693 GTTTGTACATT 18703 |||||||||| Sbjct 77356 TTTTGTACATT 77346 >seq54 Length=243407 Score = 179 bits (198), Expect = 5e-40 Identities = 196/258 (76%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 155802 AATAAAAATTTAT--GTAA----TAA-AATGCAAATATTTATTAAAACATTGACTGGAAA 155854 |||| | |||||| |||| ||| ||||||||| ||| ||||||| || ||||| || Sbjct 218383 AATATATATTTATTTGTAAGACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAA 218324 Query 155855 AACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACA 155914 |||||||||||||||||| ||| |||||||| ||| ||| || || || ||||| Sbjct 218323 AACTATTACATTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACA 218264 Query 155915 AGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGA 155974 ||| || || || ||||||||||| |||||| | || || | ||| || ||||| || || Sbjct 218263 AGACAAGGAGGGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGA 218204 Query 155975 AGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 |||| ||||||||||||||| || ||||| || ||| | || | |||||||| || Sbjct 218203 AGATGGCAGAACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTT 218144 Query 156035 AAGATTAAGAGGCGGTGT 156052 || ||| | || ||||| Sbjct 218143 GAGGTTACGTGGTGGTGT 218126 >seq73 Length=203464 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || || || ||||| || ||| | ||||| ||| ||| Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || |||||| |||||||||||||| || || || || ||| Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 180807 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || || ||| | |||||||| ||||||||| Sbjct 180806 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 180747 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || ||||||||||| ||| | |||||||| ||| Sbjct 180746 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGGT 180699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870764966000