Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq50 217 3e-51 seq73 196 9e-45 seq54 163 6e-35 >seq50 Length=135657 Score = 217 bits (240), Expect = 3e-51 Identities = 547/814 (67%), Gaps = 40/814 (5%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| |||||| || | || ||| ||||||||||||| || ||| || | ||| Sbjct 78136 CTTGTAATGAAATAAGATCCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAA 78077 Query 49633 CTATCAA-TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | ||| | | || | | ||| | ||| || |||||||||| |||||| | ||||||| | Sbjct 78076 C-ATCTAGTGCAAACAGTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTA 78018 Query 49692 CAATTCATACCCAATAA--TTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 49749 ||||||| |||||| | | || | ||||||| |||| | |||| ||| | || Sbjct 78017 GAATTCAT-CCCAATGAGATCTACA-GGTAATGAATCACATAAAAATGTACGTTCAACTT 77960 Query 49750 ctacagcttgtttaattatcataattatattatttt---ttgataatttatatttaatat 49806 | ||||||| | || || | || | | ||| | || | |||||||| | Sbjct 77959 CAACAGCTTCTGCTATAAT--TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGT 77902 Query 49807 gattcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATT 49866 | ||| | ||||||| |||| || | ||| | ||| || || |||||||| | || Sbjct 77901 TTT----ATAAAGTAAACATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTT 77846 Query 49867 CATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA 49926 ||||| ||| |||||||| ||||||||||| | || |||||||||||||| | || Sbjct 77845 CATTAGAAAATGTTAATCCAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAA 77786 Query 49927 AACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA-TTATTCTTGCTCCAAAC 49985 | || | |||||| || ||||| || || | |||| || | ||| |||| || |||| Sbjct 77785 AGCTGCCAGAAAACAAGATACCTTCAACTG-CACAAAAGCCAATTACTCTTTCTGCAAA- 77728 Query 49986 ATTAATTTATCATCTAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGG 50044 | | || || || | ||||| ||| | ||||| ||||| || |||| | | || Sbjct 77727 --TGACCGATTAT-TATTCATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGG 77671 Query 50045 TATATTTTCTATAGCTTTAAATA--ATTC----AtttttttCATNNNNNNNNNNNNNNNN 50098 || || | ||| |||| ||| | ||| || |||| ||| Sbjct 77670 TAAATGTGATATTGCTTCAAAAAGCATTTGGCGATCTTTTACATCTGATATATATTGATC 77611 Query 50099 NNNNNNNATTAATAAAGAATACATTTCAGAATGTA-CAGCTTCCATAGCTATTTGAAATG 50157 ||||| | ||||| ||||| || | | ||| ||||||| ||||||||| Sbjct 77610 A------ATTAAAAGGGAATAAGTTTCACTGTGAATCTGCT-CCATAGCAATTTGAAATC 77558 Query 50158 AATAAAATTGTCTTGCTTCTGAATACTGAA-CTTCGGAAAAGAATCGTTCAACTAAATTC 50216 |||| | ||| |||||| |||| || | ||| ||| | || |||| ||| Sbjct 77557 CATAATACATTCTAGCTTCTTCTATTTGAATCTCCTTTAAAAAATT-TACAGCTAAGTTC 77499 Query 50217 TCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTT 50276 || |||||| |||||| ||||| || |||||||| || |||||||||||||||||| Sbjct 77498 TCCATTACAATTCCATCACTAGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTT 77439 Query 50277 TCATTATCTTTTAAATTTTCCCAAGAT-TCAAGATCGTTTGATAAATCTACTTCTTCTAT 50335 || || |||||| |||||||| | ||| | || | |||||||| |||||| Sbjct 77438 TCTGGTTCCTTTAAACTTTCCCAATCTCTCATG-TCCTGACCTAAATCTATCTCTTCTGC 77380 Query 50336 TGTCCAAAATGATGCTACGGATTTTTTATACATT 50369 ||||||||||| ||| | |||||| |||||| Sbjct 77379 AGTCCAAAATGAGGCTTCTTCTTTTTTGTACATT 77346 >seq73 Length=203464 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | |||||| |||||||| | ||| | || || |||||||||||||| Sbjct 180699 ACCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGA 180758 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| || | |||||| |||||||| |||||||| |||||||||||||| Sbjct 180759 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 180818 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| |||||| |||||||| |||| ||| || | ||| || Sbjct 180819 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 180878 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || |||||||| ||||| || || | ||| |||||||| Sbjct 180879 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 >seq54 Length=243407 Score = 163 bits (180), Expect = 6e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||||| |||||| | | | || |||||||||||||||| ||| || ||||| || Sbjct 218122 AATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTA 218181 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| |||| |||| || | ||| || |||||||||||||| | |||||||| Sbjct 218182 GTCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATC 218241 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || |||||||| || || |||||||| || |||||||| || | ||| || | Sbjct 218242 TGGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGG 218301 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| ||||||| ||||| ||||| |||||||| ||||||| ||| || |||||| Sbjct 218302 TTCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 218356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478297157250