Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq50 223 6e-53 seq73 187 5e-42 seq54 156 8e-33 >seq50 Length=135657 Score = 223 bits (246), Expect = 6e-53 Identities = 565/851 (66%), Gaps = 30/851 (4%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||||||||||| ||| ||| || |||||||| ||||| |||| |||||| || | || Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAAT 38951 ||| ||||||||||||| || ||| || | ||| | ||| | | || | | | Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAAC-ATCTAGTGCAAACAGT 78060 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA- 39010 || | ||| || |||||||||| |||||| ||||||| | ||||||| |||||| | Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCAT-CCCAATGAG 78001 Query 39011 -TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || | ||||||| |||| | |||| ||| | ||| ||||||| | || | Sbjct 78000 ATCTACA-GGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAA 77942 Query 39070 tcataattatattatttt---ttgataatttatatttaatatgattcgcatataGTAAAC 39126 | | || | | ||| | || | |||||||| | | ||| ||||||| Sbjct 77941 T--TTCTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTT----ATAAAGTAAAC 77888 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 || |||| |||| ||| | |||||| || |||||||| | ||||||| ||| ||||||| Sbjct 77887 ATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 77828 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||||||||| | || |||||||||||||| | ||| || | |||||| || | Sbjct 77827 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGA 77768 Query 39247 TACCCTCCAC-ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 |||| || || ||| ||| | |||| |||| || |||| | | || || Sbjct 77767 TACCTTCAACTGCAC-AAAAGCCAATTACTCTTTCTGCAAA---TGACCGATTATTATTC 77712 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| ||| | ||||| ||||| || |||| | | |||| || | ||| |||| | Sbjct 77711 ATCCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCA 77652 Query 39366 AATA--ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 || | ||| | ||||| Sbjct 77651 AAAAGCATT--TGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAG 77594 Query 39424 TTTCAGAATGTA-CAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||| || | | || |||||||| ||||||||| |||| | || |||||| Sbjct 77593 TTTCACTGTGAATCTGC-TCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCT 77535 Query 39483 TACTGAA-CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 |||| || | ||| ||| | || |||| ||||| |||||| |||||| || Sbjct 77534 ATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGC 77476 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 ||| || |||||||| ||||||||||||||||||||||| || |||||| ||||||| Sbjct 77475 TGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTTCCCA 77416 Query 39602 AGAT-TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATT 39660 | | ||| | || | |||||||| |||||| |||||||| || ||| | || Sbjct 77415 ATCTCTCATG-TCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTT 77357 Query 39661 TTTTATACATT 39671 |||| |||||| Sbjct 77356 TTTTGTACATT 77346 >seq73 Length=203464 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | ||||| |||||||| | ||| | || || |||||||||||| || Sbjct 180699 ACCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGA 180758 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | |||||| ||||||||||||||||| ||||| |||||||| Sbjct 180759 TAAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGG 180818 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| |||||| |||||||| |||||||| || | ||| || Sbjct 180819 AATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 180878 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || || |||||||| ||||| || || | || |||||||| Sbjct 180879 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 >seq54 Length=243407 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| |||||| | | | || |||||||||||||||| ||| || |||||| || Sbjct 218123 ATAACACCACCACGTAACCTCAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAG 218182 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 |||||||||| || | || || | ||| || |||||||| ||||| | ||||| || Sbjct 218183 TCTGATAAAGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCT 218242 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || |||||||| || || |||||||| || |||||||| || ||||| || | | Sbjct 218243 GGAGGTATTCCCTCCTTGTCTTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGT 218302 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||| ||||| ||||| |||||||| ||||||| || || |||||| Sbjct 218303 TCAACTTCTAATGTAATAGTTTTCCCAGTTAAGGTTTTAACAAAAATTTGCATT 218356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134472583000