Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq57 170 6e-37 seq71 118 3e-21 seq61 107 6e-18 >seq57 Length=292597 Score = 170 bits (188), Expect = 6e-37 Identities = 357/518 (69%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||||||||||| ||||||||||| || | ||||| | Sbjct 80376 CTATCAAATCTACCTGGTCTTGTTAATGCTGGATCTAATATATCAGCACGATTTGTACCA 80435 Query 288910 GCCAATACAACAATAGATTCGGTTTG-CTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || ||||| | ||| | |||| | |||| |||||||| ||| | |||||| Sbjct 80436 GCTAATACTATTATA-CCACTTTTTGACGTAAAACCATCCATTTCAACTAACAATTGATT 80494 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG--AATCACCCGAATCGCTCCttttt 289026 | ||| | ||| ||||||||||||||| | | |||| | | || | ||||||| Sbjct 80495 TAATGTATTTTCTCTTTCATCATTTGAATTATTAGCAAATC-CACTTAT-TCCCCTTTTT 80552 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||||||||| ||||| || || | || || | ||||| | || || Sbjct 80553 TTTCCAATTGCATCAATTTCATCAATAAATATAATACTTGGTGCATTTTTTTGTGC--TT 80610 Query 289087 G--CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | |||||| || | || | || ||||| ||||||| | ||||| | ||| ||| Sbjct 80611 GAAGAAATAAATCACGAACTCTACTTGGTCCAATACCAACAAATATTTCAATAAAATCAC 80670 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| || || | |||||| ||||| ||||| || || | || | | || Sbjct 80671 TACCTGATATAGAAAAAAAAGATACATTGGCTTCACCTGCAACAGCTTTTGCTAATAATG 80730 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | ||||| ||||| ||||| || |||||| |||| || |||| |||||| || | Sbjct 80731 TTTTACCAGTTCCTGGTGGACCAACTAATAATGCTCCTTTAGGTATTTTTGCACCTAAAA 80790 Query 289265 ACTTATA--TTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | | ||| || | || || |||||||| ||||||| ||| | | ||||| ||| | Sbjct 80791 ATTCATAACGTTTT---GGTTCTTTTAAAAAATCTACAAATTCTTGTATTTCATTTTTAG 80847 Query 289322 CCTC-ATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | || ||| | || || |||||| |||| | ||||| Sbjct 80848 CTTCTTTCATA-CCAGCAACATCACCAAATTTTATATT 80884 >seq71 Length=86954 Score = 118 bits (130), Expect = 3e-21 Identities = 299/443 (67%), Gaps = 34/443 (8%) Strand=Plus/Plus Query 381028 GAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATTAT 381087 ||||| ||||| | ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 85553 GAAGAGAATGACTTGGGTCCAATATATGGTTTTCAATGGAGACATTTTAATGCAGAATAT 85612 Query 381088 GATA-ATTG--TGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 | | | || ||||| |||||| ||| | || || || || ||| | || | || Sbjct 85613 AAGACAATGCATGATA---ATTATAATGGGCAAGGAGTAGATCAATTATCAAATTTAATT 85669 Query 381145 GAC-CAGCTAA--AAAATCCT---GAAACAAGAAAT-TCACGCCGACTAATTATGACTGC 381197 || || ||| |||||||| || | |||| || || |||| |||| Sbjct 85670 GAATCACTTAAGAAAAATCCTTATGATAGAAGACATATC-----------TTAT--CTGC 85716 Query 381198 GTGGAATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTT 381257 |||||||| | || || ||||||| ||||||||||| ||||| |||| || || Sbjct 85717 ATGGAATCCATCTGCAATGAAATATATGGCATTACCACCTTGTCATATATTATCTCAATT 85776 Query 381258 CAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGG 381317 ||||| | ||||| |||||||| | |||||||| | || ||||| | || Sbjct 85777 TTATGTTGATAATAATAATAGATTAAGTTGCTCATTATATCAAAGAAGTTGTGATTTAGG 85836 Query 381318 TCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTACTCGTT-TAATTGCTCATC 381376 | | || |||||| |||||||| || ||||| || ||| ||| | ||||||||| Sbjct 85837 TTTAGGATGTCCATTTAATATTGCATCTTATTC-ATTATTATGTGTTATGATTGCTCATA 85895 Query 381377 ACACTGGACTAATTG---CGGGTGATTTTGTTTATTATCTCGGTAATACTCATATATACG 381433 |||| || || | || || ||| | ||| | | ||| || ||||||| || | Sbjct 85896 TATGTGGA-TA--TGAACCTGGAGAATTTATACATTTTATTGGTGATGCTCATATTTATG 85952 Query 381434 ACGACCATATTGAGAATTTAAAA 381456 | | ||| ||||| | |||||| Sbjct 85953 AAAATCATGTTGAGCAATTAAAA 85975 >seq61 Length=587635 Score = 107 bits (118), Expect = 6e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGA-TAAGAATCATCGGGATAATTGG--GATATAA 60046 |||||||||||||| | | || || | |||| | ||| || || ||||| ||| || Sbjct 100360 CCAGTACCAATACCATCAGCACCGTTAACTAAG-ACCATTGGAATGATTGGTACATAGAA 100418 Query 60047 TAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATT 60106 |||| || |||| | ||||||||||| | ||| |||| | || ||| | Sbjct 100419 TAAA--GGTTCAATTTGTTGACCATCATCTTGCAGATATATTAACAATGGATCATCAGCT 100476 Query 60107 TCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCT 60166 || || || ||| ||||| | ||||||| ||| || || || | | | | Sbjct 100477 TCTGGGAAAATATAACGAGTCCAAGTAGATAATTTTGTAAATATGTAACGGGCAGCACTT 100536 Query 60167 GCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 || ||||||||||| | | | |||||||| || |||||| | || || | Sbjct 100537 GCATCCTTGCCACCTTCTTTCCTGCTACCAAATTGACCACATGGCTGAAGTAAGTTCAAA 100596 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCA 60286 |||||| || || |||| ||| || | | ||||| | || | |||| |||||| Sbjct 100597 TTGTTACTTCCAACAAAATCTTGCGCCATATTTACAATCGTACTCTGTAAAGAAGCTTCA 100656 Query 60287 CCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| ||| || |||||| | |||||| ||| |||||||| ||||| ||||| Sbjct 100657 CCATGATGGTATGCACTATGTTCAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCA 100716 Query 60347 GAGTGGAGTTTTTTCTTGAACGCCGAATATACAATTTTCCT 60387 | || || || || ||| | ||||||| || |||||| Sbjct 100717 TTATTCAGCTTCTTTTTAAACACAGAATATAAAACTTTCCT 100757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815054215495