Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq54 82.4 6e-11 >seq54 Length=243407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 107538 ATTTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACC 107597 |||| ||||| || | ||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 218372 ATTTGTAAGAC-TTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACA 218314 Query 107598 GTCGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAA 107657 | ||| || || ||||| | | | ||||| |||||| || || || Sbjct 218313 TTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAG 218254 Query 107658 GGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAA 107717 || | || ||||| || | | || | ||| || || || || || || | || | Sbjct 218253 GGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGA 218194 Query 107718 ACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGA 107777 || | | |||||||| ||||| ||||||||||| || || | || ||||| || || Sbjct 218193 ACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGT 218134 Query 107778 GGGGG 107782 || || Sbjct 218133 GGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876143723015