Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq54 127 2e-24 >seq54 Length=243407 Score = 127 bits (140), Expect = 2e-24 Identities = 158/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || || || ||||| || || || | | || | ||| || Sbjct 218147 ACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCATCTTCA 218206 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| || |||||| | || || | ||| ||||| || || || ||||| ||||||||| Sbjct 218207 AGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTGTCTTGT 218266 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| || ||| |||| | || |||||| |||| ||||| | || |||||||| Sbjct 218267 ATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATAGTTTTC 218326 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT-TTAA 29791 |||||||||||||||||||| || |||||| |||| Sbjct 218327 CCAGTTAAGGTTTTAACAAAAATTTGCATTCTTAA 218361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218566194035